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Search of human proteins with 157412280
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157412280 ash2-like isoform a [Homo sapiens]
(628 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157412280 ash2-like isoform a [Homo sapiens] 1311 0.0
gi|157412282 ash2-like isoform b [Homo sapiens] 1129 0.0
gi|37588869 ring finger protein 123 [Homo sapiens] 52 2e-06
gi|126032338 ryanodine receptor 3 [Homo sapiens] 51 3e-06
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens] 49 1e-05
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 48 3e-05
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 48 3e-05
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 45 2e-04
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 45 2e-04
gi|39812378 RAN binding protein 9 [Homo sapiens] 45 3e-04
gi|40538736 RAN binding protein 10 [Homo sapiens] 45 3e-04
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ... 42 0.001
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 42 0.001
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 42 0.002
gi|194097341 period 1 [Homo sapiens] 40 0.008
gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens] 40 0.008
gi|54792090 hypothetical protein LOC23351 [Homo sapiens] 40 0.008
gi|4503615 even-skipped homeobox 1 [Homo sapiens] 39 0.011
gi|5454106 TBP-related factor 10 [Homo sapiens] 39 0.014
gi|24308203 CSRP2 binding protein isoform a [Homo sapiens] 39 0.019
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 38 0.032
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 38 0.032
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 37 0.042
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 37 0.042
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 37 0.055
gi|40068487 von Willebrand factor A domain containing 1 isoform ... 37 0.055
gi|40068485 von Willebrand factor A domain containing 1 isoform ... 37 0.055
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 37 0.072
gi|4505531 oxysterol binding protein [Homo sapiens] 37 0.072
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 37 0.072
>gi|157412280 ash2-like isoform a [Homo sapiens]
Length = 628
Score = 1311 bits (3394), Expect = 0.0
Identities = 628/628 (100%), Positives = 628/628 (100%)
Query: 1 MAAAGAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEA 60
MAAAGAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEA
Sbjct: 1 MAAAGAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEA 60
Query: 61 EGGEANLVDVSGGLETESSNGKDTLEGAGDTSEVMDTQAGSVDEENGRQLGEVELQCGIC 120
EGGEANLVDVSGGLETESSNGKDTLEGAGDTSEVMDTQAGSVDEENGRQLGEVELQCGIC
Sbjct: 61 EGGEANLVDVSGGLETESSNGKDTLEGAGDTSEVMDTQAGSVDEENGRQLGEVELQCGIC 120
Query: 121 TKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALANLTWQS 180
TKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALANLTWQS
Sbjct: 121 TKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALANLTWQS 180
Query: 181 RTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHP 240
RTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHP
Sbjct: 181 RTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKEHP 240
Query: 241 DPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSTSGNLNGGIAAGSSGKGRGAKR 300
DPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSTSGNLNGGIAAGSSGKGRGAKR
Sbjct: 241 DPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSTSGNLNGGIAAGSSGKGRGAKR 300
Query: 301 KQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLEL 360
KQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLEL
Sbjct: 301 KQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLEL 360
Query: 361 DCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGA 420
DCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGA
Sbjct: 361 DCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGA 420
Query: 421 WYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGY 480
WYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGY
Sbjct: 421 WYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGY 480
Query: 481 GQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSE 540
GQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSE
Sbjct: 481 GQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSE 540
Query: 541 IIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMGWG 600
IIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMGWG
Sbjct: 541 IIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMGWG 600
Query: 601 AVVEHTLADVLYHVETEVDGRRSPPWEP 628
AVVEHTLADVLYHVETEVDGRRSPPWEP
Sbjct: 601 AVVEHTLADVLYHVETEVDGRRSPPWEP 628
>gi|157412282 ash2-like isoform b [Homo sapiens]
Length = 534
Score = 1129 bits (2919), Expect = 0.0
Identities = 534/534 (100%), Positives = 534/534 (100%)
Query: 95 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 154
MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG
Sbjct: 1 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60
Query: 155 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 214
NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP
Sbjct: 61 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 120
Query: 215 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 274
GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS
Sbjct: 121 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 180
Query: 275 SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH 334
SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH
Sbjct: 181 SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH 240
Query: 335 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 394
PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI
Sbjct: 241 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 300
Query: 395 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 454
SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD
Sbjct: 301 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 360
Query: 455 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 514
KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF
Sbjct: 361 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 420
Query: 515 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 574
KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV
Sbjct: 421 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 480
Query: 575 SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP 628
SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP
Sbjct: 481 SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP 534
>gi|37588869 ring finger protein 123 [Homo sapiens]
Length = 1314
Score = 52.0 bits (123), Expect = 2e-06
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 56/211 (26%)
Query: 392 LKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWS--QPLGNLQA 449
L + DD L V+G + +R++ V KG W +E+ + ++GW N +
Sbjct: 106 LLVDDDLLGVIGHSNFGTIRSTTCVYKGKWLYEVLISS---QGLMQIGWCTISCRFNQEE 162
Query: 450 PLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDK 509
+G SY++ + K++ + +Y + GD++ I+L + T
Sbjct: 163 GVGDTHNSYAYDGNRVRKWNVTT-TNYGKAWAAGDIVSCLIDLDDGT------------- 208
Query: 510 ALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGV---YFPAI 566
+ F NGV+ G A++++ G+ YFPAI
Sbjct: 209 -------------------------------LSFCLNGVSLGTAFENLSRGLGMAYFPAI 237
Query: 567 SLYKSCTVSINFGP-CFKYPPKDLTYRPMSD 596
SL +V+ NFG +YP YRP+ D
Sbjct: 238 SLSFKESVAFNFGSRPLRYPVAG--YRPLQD 266
>gi|126032338 ryanodine receptor 3 [Homo sapiens]
Length = 4870
Score = 51.2 bits (121), Expect = 3e-06
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 393 KISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLG 452
K+S D++ + V S+ VR G WYFE E+ R+GW++P LG
Sbjct: 1065 KVSIDKIR------FFRVERSYAVRSGKWYFEF---EVVTGGDMRVGWARPGCRPDVELG 1115
Query: 453 YDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPE 494
D ++ + +G ++HQ G ++ + GDV+G INL +
Sbjct: 1116 ADDQAFVFEGNRGQRWHQGSG-YFGRTWQPGDVVGCMINLDD 1156
>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
Length = 4967
Score = 49.3 bits (116), Expect = 1e-05
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 413 SHGVRKGAWYFE---ITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFH 469
++ V+ G WYFE +T +M R+GWS+P LG D+ ++++ K ++H
Sbjct: 1093 TYAVKAGRWYFEFETVTAGDM------RVGWSRPGCQPDQELGSDERAFAFDGFKAQRWH 1146
Query: 470 QSIGKHYSSGYGQGDVLGFYINLPEDT 496
Q +HY + GDV+G +++ E T
Sbjct: 1147 QG-NEHYGRSWQAGDVVGCMVDMNEHT 1172
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 47.8 bits (112), Expect = 3e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 413 SHGVRKGAWYFE---ITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFH 469
S+ V+ G WYFE +T EM R+GW++P LG D+ +Y + +G ++H
Sbjct: 1079 SYTVQSGRWYFEFEAVTTGEM------RVGWARPELRPDVELGADELAYVFNGHRGQRWH 1132
Query: 470 QSIGKHYSSGYGQGDVLGFYINLPEDT 496
+ + + GDV+G I+L E+T
Sbjct: 1133 LG-SEPFGRPWQPGDVVGCMIDLTENT 1158
Score = 30.4 bits (67), Expect = 5.1
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 411 RASHGVRKGAWYFEITVDEMPP-----DTAARLGWSQPLGNLQAP----------LGYDK 455
RA + WYFE+ VDE+ P T R+GW+ G P +G D
Sbjct: 651 RAEGTTQYSKWYFEVMVDEVTPFLTAQATHLRVGWALTEGYTPYPGAGEGWGGNGVGDDL 710
Query: 456 FSYSW 460
+SY +
Sbjct: 711 YSYGF 715
Score = 30.0 bits (66), Expect = 6.7
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 2 AAAGAGPGQEAGAGPGPGAVANATGAEE-GEMKPVAAGAAAPPGEGISAAPTVEPSS 57
AA GAG +EA GPG A + G +P AG G+ A P S
Sbjct: 4410 AAEGAGDEEEAVHEAGPGGADGAVAVTDGGPFRPEGAGGLGDMGDTTPAEPPTPEGS 4466
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 47.8 bits (112), Expect = 3e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 413 SHGVRKGAWYFE---ITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFH 469
S+ V+ G WYFE +T EM R+GW++P LG D+ +Y + +G ++H
Sbjct: 1079 SYTVQSGRWYFEFEAVTTGEM------RVGWARPELRPDVELGADELAYVFNGHRGQRWH 1132
Query: 470 QSIGKHYSSGYGQGDVLGFYINLPEDT 496
+ + + GDV+G I+L E+T
Sbjct: 1133 LG-SEPFGRPWQPGDVVGCMIDLTENT 1158
Score = 30.4 bits (67), Expect = 5.1
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 411 RASHGVRKGAWYFEITVDEMPP-----DTAARLGWSQPLGNLQAP----------LGYDK 455
RA + WYFE+ VDE+ P T R+GW+ G P +G D
Sbjct: 651 RAEGTTQYSKWYFEVMVDEVTPFLTAQATHLRVGWALTEGYTPYPGAGEGWGGNGVGDDL 710
Query: 456 FSYSW 460
+SY +
Sbjct: 711 YSYGF 715
Score = 30.0 bits (66), Expect = 6.7
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 2 AAAGAGPGQEAGAGPGPGAVANATGAEE-GEMKPVAAGAAAPPGEGISAAPTVEPSS 57
AA GAG +EA GPG A + G +P AG G+ A P S
Sbjct: 4415 AAEGAGDEEEAVHEAGPGGADGAVAVTDGGPFRPEGAGGLGDMGDTTPAEPPTPEGS 4471
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 45.4 bits (106), Expect = 2e-04
Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 58/209 (27%)
Query: 385 LHDRAPQLKISDDRLTVVGEKG-YSMVRASHGVRKGAWYFEITVDE----------MPPD 433
LH + + + S LT+ G +S RAS+GVR+G FE+ ++E P
Sbjct: 120 LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 179
Query: 434 TAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLP 493
R+GWS L + LG + FSY + G K S ++Y + + DV+G +
Sbjct: 180 HVVRIGWS--LDSCSTQLGEEPFSYGY-GGTGKKSTNSRFENYGDKFAENDVIGCF---- 232
Query: 494 EDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVA 553
D E + E+ F KNG G+A
Sbjct: 233 ADFECGNDV-------------------------------------ELSFTKNGKWMGIA 255
Query: 554 Y---KDIFEGVYFPAISLYKSCTVSINFG 579
+ K+ G L K+C V NFG
Sbjct: 256 FRIQKEALGGQALYPHVLVKNCAVEFNFG 284
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 45.4 bits (106), Expect = 2e-04
Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 58/209 (27%)
Query: 385 LHDRAPQLKISDDRLTVVGEKG-YSMVRASHGVRKGAWYFEITVDE----------MPPD 433
LH + + + S LT+ G +S RAS+GVR+G FE+ ++E P
Sbjct: 220 LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 279
Query: 434 TAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLP 493
R+GWS L + LG + FSY + G K S ++Y + + DV+G +
Sbjct: 280 HVVRIGWS--LDSCSTQLGEEPFSYGY-GGTGKKSTNSRFENYGDKFAENDVIGCF---- 332
Query: 494 EDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVA 553
D E + E+ F KNG G+A
Sbjct: 333 ADFECGNDV-------------------------------------ELSFTKNGKWMGIA 355
Query: 554 Y---KDIFEGVYFPAISLYKSCTVSINFG 579
+ K+ G L K+C V NFG
Sbjct: 356 FRIQKEALGGQALYPHVLVKNCAVEFNFG 384
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 44.7 bits (104), Expect = 3e-04
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 405 KGYSMVRASHGVRK--GAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRS 462
K + VRA+H + G +YFE+ + D +G S N+ G+DK SY +
Sbjct: 197 KDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHG 256
Query: 463 KKGTKFHQS-IGKHYSSGYGQGDVLGFYINLPEDT 496
G F S G+ Y + GDV+G +NL +T
Sbjct: 257 DDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNT 291
>gi|40538736 RAN binding protein 10 [Homo sapiens]
Length = 620
Score = 44.7 bits (104), Expect = 3e-04
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 346 AEPDPHAPDPEKLELD---CWAGKPIPGDLYRACLYERVLLALHDRAPQLKIS---DDRL 399
A DP A +P+ + G P PG+ + +R+ A++ + L S D+
Sbjct: 4 ATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPKDKY 63
Query: 400 TVVG----------------EKGYSMVRASHGVRK--GAWYFEITVDEMPPDTAARLGWS 441
+G K + VRA+H + G +YFE+ + D +G S
Sbjct: 64 NYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLS 123
Query: 442 QPLGNLQAPLGYDKFSYSWRSKKGTKFHQS-IGKHYSSGYGQGDVLGFYINLPEDT 496
N+ G+DK SY + G F S G+ Y + GDV+G +NL T
Sbjct: 124 AQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGT 179
>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
[Homo sapiens]
Length = 806
Score = 42.4 bits (98), Expect = 0.001
Identities = 70/308 (22%), Positives = 108/308 (35%), Gaps = 77/308 (25%)
Query: 297 GAKRKQQDGGTTGTTKKARSDPLFSAQR-LPPHGYPLEHPFNKDGYRYILAEPDPHAPDP 355
GA++ QQ G G T++ D +R HG ++ Y + P +
Sbjct: 202 GARQGQQQAGGDGKTEQKGGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEED 261
Query: 356 EKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHG 415
E + + D Y L+ ++ DR ++ + + G RAS+G
Sbjct: 262 EHFD-----DTVVCLDTYNCDLHFKIS---RDRLSASSLTMESFAFLWAGG----RASYG 309
Query: 416 VRKGAWYFEITVDEMPPDT----------AARLGWSQPLGNLQAPLGYDKFSYSWRSKKG 465
V KG FE+ V E P R+GWS + LG ++FSY + S KG
Sbjct: 310 VSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGML--LGEEEFSYGY-SLKG 366
Query: 466 TKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYFEEKDF 525
K + Y + + DV+ + N D
Sbjct: 367 IKTCNCETEDYGEKFDENDVITCFANFESD------------------------------ 396
Query: 526 VDKAEKSLKQTPHSEIIFYKNGVNQGVAY---KDIFEG-VYFPAISLYKSCTVSINFG-- 579
E+ + KNG + GVA+ K++ G FP + L +C V NFG
Sbjct: 397 ------------EVELSYAKNGQDLGVAFKISKEVLAGRPLFPHV-LCHNCAVEFNFGQK 443
Query: 580 --PCFKYP 585
P F P
Sbjct: 444 EKPYFPIP 451
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 42.4 bits (98), Expect = 0.001
Identities = 36/120 (30%), Positives = 45/120 (37%), Gaps = 10/120 (8%)
Query: 5 GAGPGQEAGAGPGPGAVANATGAEEGE---MKPVAAGAAAPPGEGISAAPTVEPSSGEAE 61
G G G+E G G G G EEGE + G GE E GE E
Sbjct: 883 GEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGE 942
Query: 62 GGEANLVDVSGGLETE----SSNGKDTLEGAGDTSE---VMDTQAGSVDEENGRQLGEVE 114
GE + G E E G++ EG G+ E + G +EE G + GE E
Sbjct: 943 DGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEE 1002
Score = 34.3 bits (77), Expect = 0.36
Identities = 32/114 (28%), Positives = 41/114 (35%), Gaps = 8/114 (7%)
Query: 5 GAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEAEGGE 64
G G G+E G G G G EGE + GE GE EG E
Sbjct: 962 GEGEGEEEGEGEGE------EGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEE 1015
Query: 65 ANLVDVSGGLETESSNGKDTLEGAGDTSEVMDTQAGSVDEENGRQLGEVELQCG 118
+V G +E E G+ E + E + + EEN R E E + G
Sbjct: 1016 EEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEG--EENRRNREEEEEEEG 1067
Score = 33.9 bits (76), Expect = 0.46
Identities = 33/108 (30%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 7 GPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEAEGGEAN 66
G G+E G G G EEGE GEG E GE EG E
Sbjct: 840 GEGEEE-EGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEG-------EEEEGEGEGEEEG 891
Query: 67 LVDVSGGLETESSNGKDTLEGAGDTSEVMDTQAGSVDEENGRQLGEVE 114
G E E G+ EG G+ E G + E G GE E
Sbjct: 892 ----EGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEE 935
Score = 33.9 bits (76), Expect = 0.46
Identities = 34/112 (30%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Query: 5 GAGPGQEA-GAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEAEGG 63
G G G+E G G G EEGE GEG E GE EG
Sbjct: 944 GEGEGEEEEGEWEGEEEEGEGEGEEEGE------------GEGEEGEGEGEEEEGEGEGE 991
Query: 64 EANLVDVSGGLETESSNGKDTLEGAGDTSEVMDTQA-GSVDEENGRQLGEVE 114
E G E G+ EG G+ E + + G V+ E G GE E
Sbjct: 992 EEE------GEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEE 1037
Score = 31.2 bits (69), Expect = 3.0
Identities = 31/110 (28%), Positives = 37/110 (33%), Gaps = 14/110 (12%)
Query: 5 GAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEAEGGE 64
G G +E G G V G E E + GEG E GE E GE
Sbjct: 803 GRGEEKEEGGEVEGGEVEEGKGEREEEEEE---------GEGEE-----EEGEGEEEEGE 848
Query: 65 ANLVDVSGGLETESSNGKDTLEGAGDTSEVMDTQAGSVDEENGRQLGEVE 114
+ G E E G+ EG E + + EE G GE E
Sbjct: 849 GEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEE 898
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 42.0 bits (97), Expect = 0.002
Identities = 57/217 (26%), Positives = 78/217 (35%), Gaps = 70/217 (32%)
Query: 393 KISDDRLTVVGEKGYSMV------RASHGVRKGAWYFEITVDEMPPDT----------AA 436
KIS DRL+ S RAS+GV KG FE+ V E P
Sbjct: 300 KISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEV 359
Query: 437 RLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDT 496
R+GWS + LG ++FSY + S KG K + Y + + DV+ + N D
Sbjct: 360 RIGWSLTTSGML--LGEEEFSYGY-SLKGIKTCNCETEDYGEKFDENDVITCFANFESD- 415
Query: 497 ETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAY-- 554
E+ + KNG + GVA+
Sbjct: 416 -----------------------------------------EVELSYAKNGQDLGVAFKI 434
Query: 555 -KDIFEG-VYFPAISLYKSCTVSINFG----PCFKYP 585
K++ G FP + L +C V NFG P F P
Sbjct: 435 SKEVLAGRPLFPHV-LCHNCAVEFNFGQKEKPYFPIP 470
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 39.7 bits (91), Expect = 0.008
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 31 EMKPVAAGAAAPPGEGISAAPTVEPSSGEAEGGEANLVDVSGGLETESSNGKDTLEGAGD 90
E P A GAA G G SA P P S EA EA L +V TESSN +D L G+ D
Sbjct: 990 EELPRAEGAAVAGGPGSSAGP--PPPSAEAAEPEARLAEV-----TESSN-QDALSGSSD 1041
Query: 91 TSEVM---DTQAGSVDEENG 107
E++ D+++G+ +G
Sbjct: 1042 LLELLLQEDSRSGTGSAASG 1061
>gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens]
Length = 576
Score = 39.7 bits (91), Expect = 0.008
Identities = 51/217 (23%), Positives = 81/217 (37%), Gaps = 58/217 (26%)
Query: 380 RVLLALHDRAPQLKISDDRLTV-VGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARL 438
R +L +D + LKIS L + VR + V G WY+E+TV ++
Sbjct: 319 RAMLNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVDAGVWYYEVTV---VTSGVMQI 375
Query: 439 GW----SQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGK-HYSSGYGQGDVLGFYINLP 493
GW S+ L + +G D++S ++ + ++ + K H + +GD +GF ++L
Sbjct: 376 GWATRDSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHPCWKEGDTVGFLLDLN 435
Query: 494 EDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVA 553
E ++IF+ NG NQ
Sbjct: 436 E--------------------------------------------KQMIFFLNG-NQLPP 450
Query: 554 YKDIFEGV---YFPAISLYKSCTVSINFG-PCFKYPP 586
K +F +F A S NFG FKYPP
Sbjct: 451 EKQVFSSTVSGFFAAASFMSYQQCEFNFGAKPFKYPP 487
>gi|54792090 hypothetical protein LOC23351 [Homo sapiens]
Length = 678
Score = 39.7 bits (91), Expect = 0.008
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 10 QEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEAEG--GEANL 67
QEA +G GPGA+A+ G + G APP +G + T G+ G G+
Sbjct: 195 QEASSGQGPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSMGPGDCRGARGDTYA 254
Query: 68 VDVSGG 73
V+ GG
Sbjct: 255 VEKEGG 260
>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
Length = 407
Score = 39.3 bits (90), Expect = 0.011
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 1 MAAAGAGPGQE---AGAGP-GPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPS 56
+A + AGPG E AGA GPG A + + G+ +P ++ + E I + T + +
Sbjct: 73 LAGSAAGPGAEPQVAGAAMLGPGPPAPSVDSLSGQGQPSSSDTESDFYEEIEVSCTPDCA 132
Query: 57 SGEAE-------GGEANLVDVSGGLETESSNG 81
+G AE G EA + +GG ET SNG
Sbjct: 133 TGNAEYQHSKGSGSEALVGSPNGGSETPKSNG 164
>gi|5454106 TBP-related factor 10 [Homo sapiens]
Length = 218
Score = 38.9 bits (89), Expect = 0.014
Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 6 AGPGQEAGAGPGPGAVANATG---------AEEGEMKPVAAGAAAPPGEGISAAPTVEPS 56
A P AG GPG GA A TG AE PV+AG AAPP IS V PS
Sbjct: 43 ASPAGTAG-GPGAGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPS 101
Query: 57 SGEAE 61
+ +
Sbjct: 102 AANGD 106
>gi|24308203 CSRP2 binding protein isoform a [Homo sapiens]
Length = 782
Score = 38.5 bits (88), Expect = 0.019
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 76 TESSNGKDTLEGAGDTSEVMDTQ-AGSVD---EENGRQLG-----------EVELQCGIC 120
T +S G + E G+T +++++ SVD +++G L ++ C C
Sbjct: 21 TSTSEGLEEGEVEGETLLIVESEDQASVDLSHDQSGDSLNSDEGDVSWMEEQLSYFCDKC 80
Query: 121 TKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALANLTWQS 180
KW A + S L + F C+ C G + R + +++ + A+ NL+ +
Sbjct: 81 QKWIPASQLR-EQLSYLKGDNFFRFTCSDCSADGKEQYERLKLTWQQVVMLAMYNLSLEG 139
Query: 181 RTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFL---VK 237
+ + F +DI FI+K+W + R TW + + +S ++ +
Sbjct: 140 SGRQGY----FRWKEDICAFIEKHWTFL-LGNRKKTSTWWSTVAGCLSVGSPMYFRSGAQ 194
Query: 238 EHPDPG 243
E +PG
Sbjct: 195 EFGEPG 200
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 37.7 bits (86), Expect = 0.032
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 5 GAGPGQEAGA-GPGPGAVANAT-GAEEGEMKP-------VAAGAAAPPGEGISAAPTVEP 55
G G E GA GP G VA A+ G+ + P VA GA + P ++AP P
Sbjct: 50 GGRAGAEGGAAGPDDGGVAAASSGSAQAASSPAASVGTGVAGGAVSTPAPAPASAPAPGP 109
Query: 56 SSGEAEGGEANLVD 69
S+G G A+L+D
Sbjct: 110 SAGPPPGPPASLLD 123
Score = 30.0 bits (66), Expect = 6.7
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 1 MAAAGAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEA 60
+ A AGP + A P AV EEG GAA P G++AA SSG A
Sbjct: 22 VTAGAAGPAAQE-AEPPLTAVLVEEEEEEGGRAGAEGGAAGPDDGGVAAA-----SSGSA 75
Query: 61 EGGEANLVDVSGGL 74
+ + V G+
Sbjct: 76 QAASSPAASVGTGV 89
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 37.7 bits (86), Expect = 0.032
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 5 GAGPGQEAGA-GPGPGAVANAT-GAEEGEMKP-------VAAGAAAPPGEGISAAPTVEP 55
G G E GA GP G VA A+ G+ + P VA GA + P ++AP P
Sbjct: 50 GGRAGAEGGAAGPDDGGVAAASSGSAQAASSPAASVGTGVAGGAVSTPAPAPASAPAPGP 109
Query: 56 SSGEAEGGEANLVD 69
S+G G A+L+D
Sbjct: 110 SAGPPPGPPASLLD 123
Score = 30.0 bits (66), Expect = 6.7
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 1 MAAAGAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSGEA 60
+ A AGP + A P AV EEG GAA P G++AA SSG A
Sbjct: 22 VTAGAAGPAAQE-AEPPLTAVLVEEEEEEGGRAGAEGGAAGPDDGGVAAA-----SSGSA 75
Query: 61 EGGEANLVDVSGGL 74
+ + V G+
Sbjct: 76 QAASSPAASVGTGV 89
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 37.4 bits (85), Expect = 0.042
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 159 LRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMT 218
L +Q N K + S+ ++RT D+H T S +KD P DK + T K
Sbjct: 1400 LNEQGNFKSLSQSSK-----EARTSDKHDSTRASSNKDFTPNRDKKTDYDTREYSSSKRR 1454
Query: 219 WPNNIVKTMSKERDVFLVKEHPDPGSKD---PEEDYPKFGLLDQDLSNIGPAYDNQ 271
N +++ +D + G K+ E D PK G D SN P+ D +
Sbjct: 1455 DEKN---ELTRRKDSPSRNKDSASGQKNKPREERDLPKKGTGDSKKSNSSPSRDRK 1507
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 37.4 bits (85), Expect = 0.042
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 159 LRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMT 218
L +Q N K + S+ ++RT D+H T S +KD P DK + T K
Sbjct: 1434 LNEQGNFKSLSQSSK-----EARTSDKHDSTRASSNKDFTPNRDKKTDYDTREYSSSKRR 1488
Query: 219 WPNNIVKTMSKERDVFLVKEHPDPGSKD---PEEDYPKFGLLDQDLSNIGPAYDNQ 271
N +++ +D + G K+ E D PK G D SN P+ D +
Sbjct: 1489 DEKN---ELTRRKDSPSRNKDSASGQKNKPREERDLPKKGTGDSKKSNSSPSRDRK 1541
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 37.0 bits (84), Expect = 0.055
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 2 AAAGAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGI----SAAPTVE 54
AAA A PG A PGPG A A GAE E + GAAA E ++ PTV+
Sbjct: 49 AAAAAAPGPTPPAPPGPGTDAQAAGAERAE-EAAGPGAAALQREAAYNWQASKPTVQ 104
Score = 34.7 bits (78), Expect = 0.27
Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 5 GAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAA----------APPGEGISAAPTVE 54
G G G G PGP A A AT A AA AA APPG G A
Sbjct: 15 GVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQAAGA 74
Query: 55 PSSGEAEG 62
+ EA G
Sbjct: 75 ERAEEAAG 82
Score = 30.8 bits (68), Expect = 3.9
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 1 MAAAGAG------PGQEAGAGPG--PGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPT 52
MAA G+G PG G G G PG ANA AA AAA P
Sbjct: 1 MAAGGSGGRASCPPGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPP 60
Query: 53 VEPSSG-EAEGGEANLVDVSGG 73
P G +A+ A + + G
Sbjct: 61 APPGPGTDAQAAGAERAEEAAG 82
>gi|40068487 von Willebrand factor A domain containing 1 isoform 2
[Homo sapiens]
Length = 233
Score = 37.0 bits (84), Expect = 0.055
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 6 AGPGQ---EAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSS----- 57
AGPG E+GAGP P +A EE + + A P +S AP + ++
Sbjct: 94 AGPGASGPESGAGPAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYH 153
Query: 58 ---GEAEGGEANLVDVSGGLETESSNG 81
G GGEA V+V G + G
Sbjct: 154 VQFGPLRGGEAQRVEVPAGRNCTTLQG 180
>gi|40068485 von Willebrand factor A domain containing 1 isoform 1
[Homo sapiens]
Length = 445
Score = 37.0 bits (84), Expect = 0.055
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 6 AGPGQ---EAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSS----- 57
AGPG E+GAGP P +A EE + + A P +S AP + ++
Sbjct: 306 AGPGASGPESGAGPAPTQLAALPAPEEAGPERIVISHARPRSLRVSWAPALGSAAALGYH 365
Query: 58 ---GEAEGGEANLVDVSGGLETESSNG 81
G GGEA V+V G + G
Sbjct: 366 VQFGPLRGGEAQRVEVPAGRNCTTLQG 392
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 36.6 bits (83), Expect = 0.072
Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 1 MAAAGAG--PGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAAPTVEPSSG 58
M A G G PG+ GA P PG A + P A PPG G AP P
Sbjct: 1 MDARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPG--PAPPQHPPRA 58
Query: 59 EAEGGEANLVDVSGGLETESSNGKDTLEGAGDTSEVMDTQAGSVDEENGR 108
EA EA G +D+ G T T GS + E GR
Sbjct: 59 EALPPEA----ADEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGR 104
>gi|4505531 oxysterol binding protein [Homo sapiens]
Length = 807
Score = 36.6 bits (83), Expect = 0.072
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 1 MAAAGAGPGQEAGAGPGPGAVANATGAEEGEMKPVAAGAAAPPGEGISAA-PTVEPSSGE 59
+ GAGP G G G G +GA G + AAG P G++AA P P +G
Sbjct: 20 LGGGGAGP-PVVGGGGGRGDAGPGSGAASGTVVAAAAGGPGPGAGGVAAAGPAPAPPTGG 78
Query: 60 AEGGEA 65
+ G A
Sbjct: 79 SGGSGA 84
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 36.6 bits (83), Expect = 0.072
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 225 KTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSTSGNLN 284
++ +KE+D+ P P SKDP+ ++ G QSS++ +S N N
Sbjct: 803 QSAAKEKDLLPSPAGPVP-SKDPKTEH-------------GSRKRTISQSSSLKSSSNSN 848
Query: 285 GGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLE 333
+ S +K+K+ +G T+ ++K+ + S+ PP L+
Sbjct: 849 KETSGSSKNSSSTSKQKKTEGKTSSSSKEVKEKAPSSSSNCPPSAPTLD 897
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,585,575
Number of Sequences: 37866
Number of extensions: 1521369
Number of successful extensions: 6673
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 5852
Number of HSP's gapped (non-prelim): 884
length of query: 628
length of database: 18,247,518
effective HSP length: 108
effective length of query: 520
effective length of database: 14,157,990
effective search space: 7362154800
effective search space used: 7362154800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.