Guide to the Human Genome
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Name: KIAA0323 Sequence: fasta or formatted (678aa) NCBI GI: 54792090
Description:

hypothetical protein LOC23351

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         54           2
 C cysteine            1.9         13           1
 D aspartate           5.5         37           2
 E glutamate           7.4         50           3
 F phenylalanine       3.8         26           2
 G glycine            10.9         74           4
 H histidine           2.8         19           1
 I isoleucine          2.8         19           2
 K lysine              4.1         28           2
 L leucine             9.6         65           2
 M methionine          1.6         11           1
 N asparagine          1.9         13           1
 P proline             7.2         49           3
 Q glutamine           5.6         38           3
 R arginine            8.1         55           2
 S serine              7.7         52           2
 T threonine           2.7         18           1
 V valine              5.2         35           1
 W tryptophan          2.1         14           1
 Y tyrosine            1.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC23351 
KIAA1305              0.172   hypothetical protein LOC57523 
N4BP1                 0.165   Nedd4 binding protein 1 
ZC3H12C               0.117   zinc finger CCCH-type containing 12C 
ZC3H12A               0.117   zinc finger CCCH-type containing 12A 
ZC3H12B               0.113   zinc finger CCCH-type containing 12B 
ZC3H12D               0.108   zinc finger CCCH-type containing 12D 
COL13A1               0.023   alpha 1 type XIII collagen isoform 19 
COL13A1               0.023   alpha 1 type XIII collagen isoform 17 
COL13A1               0.023   alpha 1 type XIII collagen isoform 15 
COL13A1               0.023   alpha 1 type XIII collagen isoform 5 
COL1A1                0.022   alpha 1 type I collagen preproprotein 
COL25A1               0.021   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.021   collagen, type XXV, alpha 1 isoform 2 
COL9A3                0.020   alpha 3 type IX collagen 
COL13A1               0.020   alpha 1 type XIII collagen isoform 20 
COL13A1               0.020   alpha 1 type XIII collagen isoform 13 
COL13A1               0.020   alpha 1 type XIII collagen isoform 12 
COL13A1               0.020   alpha 1 type XIII collagen isoform 9 
COL13A1               0.020   alpha 1 type XIII collagen isoform 7 
COL13A1               0.020   alpha 1 type XIII collagen isoform 6 
COL13A1               0.020   alpha 1 type XIII collagen isoform 3 
COL13A1               0.020   alpha 1 type XIII collagen isoform 2 
COL13A1               0.020   alpha 1 type XIII collagen isoform 1 
COL13A1               0.020   alpha 1 type XIII collagen isoform 8 
COL13A1               0.019   alpha 1 type XIII collagen isoform 18 
COL13A1               0.019   alpha 1 type XIII collagen isoform 16 
COL13A1               0.019   alpha 1 type XIII collagen isoform 14 
COL13A1               0.019   alpha 1 type XIII collagen isoform 11 
COL13A1               0.019   alpha 1 type XIII collagen isoform 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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