Guide to the Human Genome
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Name: RYR3 Sequence: fasta or formatted (4870aa) NCBI GI: 126032338
Description:

ryanodine receptor 3

Referenced in:

Gene Structure
Muscle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0        292           3
 C cysteine            2.2        107           2
 D aspartate           5.3        257           4
 E glutamate           8.6        419           8
 F phenylalanine       4.6        224           4
 G glycine             6.2        302           3
 H histidine           2.4        117           1
 I isoleucine          5.1        247           2
 K lysine              6.2        303           4
 L leucine            11.4        557           3
 M methionine          2.8        138           2
 N asparagine          4.1        200           3
 P proline             4.1        199           2
 Q glutamine           4.2        205           2
 R arginine            4.9        238           2
 S serine              6.8        331           3
 T threonine           4.7        229           3
 V valine              6.1        296           3
 W tryptophan          1.2         60           2
 Y tyrosine            3.1        149           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ryanodine receptor 3 
RYR2                  0.503   cardiac muscle ryanodine receptor 
RYR1                  0.485   skeletal muscle ryanodine receptor isoform 1 
RYR1                  0.484   skeletal muscle ryanodine receptor isoform 2 
ITPR2                 0.015   inositol 1,4,5-triphosphate receptor, type 2 
ITPR1                 0.014   inositol 1,4,5-triphosphate receptor, type 1 isofor...
ITPR1                 0.014   inositol 1,4,5-triphosphate receptor, type 1 isofor...
ITPR3                 0.014   inositol 1,4,5-triphosphate receptor, type 3 
RNF123                0.005   ring finger protein 123 
RSPRY1                0.004   ring finger and SPRY domain containing 1 
ASH2L                 0.003   ash2-like isoform b 
ASH2L                 0.003   ash2-like isoform a 
RANBP10               0.002   RAN binding protein 10 
RANBP9                0.002   RAN binding protein 9 
HNRNPUL2              0.002   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
DDX1                  0.002   DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 
NEFM                  0.002   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.002   neurofilament, medium polypeptide 150kDa isoform 2 ...
MAP1B                 0.002   microtubule-associated protein 1B 
WDR87                 0.002   NYD-SP11 protein 
NUMA1                 0.002   nuclear mitotic apparatus protein 1 
NCL                   0.001   nucleolin 
LOC100294088          0.001   PREDICTED: hypothetical protein, partial 
LOC391722             0.001   PREDICTED: similar to myosin regulatory light chain...
C9orf75               0.001   hypothetical protein LOC286262 isoform 2 
C9orf75               0.001   hypothetical protein LOC286262 isoform 1 
LOC391722             0.001   PREDICTED: similar to myosin regulatory light chain ...
LOC391722             0.001   PREDICTED: similar to myosin regulatory light chain ...
C4orf8                0.001   hypothetical protein LOC8603 
CENPF                 0.001   centromere protein F 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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