Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FGF13 Sequence: fasta or formatted (192aa) NCBI GI: 16306543
Description:

fibroblast growth factor 13 isoform 5

Referenced in:

Fibroblast Growth Factors

Other entries for this name:
alt prot [199aa] fibroblast growth factor 13 isoform 4
alt prot [255aa] fibroblast growth factor 13 isoform 2
alt prot [226aa] fibroblast growth factor 13 isoform 3
alt prot [226aa] fibroblast growth factor 13 isoform 3
alt prot [245aa] fibroblast growth factor 13 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          7           2
 C cysteine            0.5          1           1
 D aspartate           2.6          5           1
 E glutamate           6.2         12           1
 F phenylalanine       3.1          6           1
 G glycine             8.9         17           2
 H histidine           2.6          5           1
 I isoleucine          3.1          6           1
 K lysine              8.9         17           2
 L leucine            10.4         20           2
 M methionine          3.1          6           1
 N asparagine          4.2          8           1
 P proline             4.2          8           1
 Q glutamine           4.7          9           3
 R arginine            3.6          7           1
 S serine             10.4         20           2
 T threonine           6.8         13           1
 V valine              5.7         11           2
 W tryptophan          0.5          1           1
 Y tyrosine            6.8         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibroblast growth factor 13 isoform 5 
FGF13                 0.959   fibroblast growth factor 13 isoform 1 
FGF13                 0.956   fibroblast growth factor 13 isoform 3 
FGF13                 0.956   fibroblast growth factor 13 isoform 3 
FGF13                 0.956   fibroblast growth factor 13 isoform 2 
FGF13                 0.956   fibroblast growth factor 13 isoform 4 
FGF14                 0.698   fibroblast growth factor 14 isoform 1B 
FGF14                 0.695   fibroblast growth factor 14 isoform 1A 
FGF12                 0.657   fibroblast growth factor 12 isoform 2 
FGF12                 0.657   fibroblast growth factor 12 isoform 1 
FGF11                 0.525   fibroblast growth factor 11 
FGF9                  0.266   fibroblast growth factor 9 precursor 
FGF20                 0.255   fibroblast growth factor 20 
FGF16                 0.247   fibroblast growth factor 16 
FGF10                 0.203   fibroblast growth factor 10 precursor 
FGF5                  0.195   fibroblast growth factor 5 isoform 1 precursor [Homo...
FGF7                  0.190   fibroblast growth factor 7 precursor 
FGF3                  0.181   fibroblast growth factor 3 precursor 
FGF6                  0.179   fibroblast growth factor 6 precursor 
FGF4                  0.168   fibroblast growth factor 4 precursor 
FGF1                  0.157   fibroblast growth factor 1 (acidic) isoform 1 propr...
FGF1                  0.157   fibroblast growth factor 1 (acidic) isoform 1 proprot...
FGF1                  0.157   fibroblast growth factor 1 (acidic) isoform 1 propr...
FGF1                  0.157   fibroblast growth factor 1 (acidic) isoform 1 propr...
FGF22                 0.148   fibroblast growth factor 22 precursor 
FGF2                  0.121   fibroblast growth factor 2 
FGF18                 0.091   fibroblast growth factor 18 precursor 
FGF8                  0.082   fibroblast growth factor 8 isoform A precursor [Homo...
FGF8                  0.082   fibroblast growth factor 8 isoform B precursor 
FGF8                  0.082   fibroblast growth factor 8 isoform E precursor [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press