Guide to the Human Genome
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Name: HOMER3 Sequence: fasta or formatted (361aa) NCBI GI: 224809414
Description:

Homer, neuronal immediate early gene, 3 isoform 1

Referenced in:

Neurons

Other entries for this name:
alt mRNA [361aa] Homer, neuronal immediate early gene, 3 isoform 1
alt prot [358aa] Homer, neuronal immediate early gene, 3 isoform 2
alt prot [325aa] Homer, neuronal immediate early gene, 3 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.4         52           4
 C cysteine            0.0          0           0
 D aspartate           2.5          9           1
 E glutamate          12.5         45           2
 F phenylalanine       3.3         12           2
 G glycine             6.4         23           2
 H histidine           1.4          5           1
 I isoleucine          2.5          9           2
 K lysine              4.4         16           2
 L leucine             9.4         34           2
 M methionine          1.1          4           1
 N asparagine          2.8         10           2
 P proline             3.9         14           2
 Q glutamine           8.3         30           2
 R arginine            8.0         29           1
 S serine              6.6         24           1
 T threonine           5.8         21           1
 V valine              4.4         16           1
 W tryptophan          1.1          4           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Homer, neuronal immediate early gene, 3 isoform 1 [... 
HOMER3                1.000   Homer, neuronal immediate early gene, 3 isoform 1 [...
HOMER3                0.984   Homer, neuronal immediate early gene, 3 isoform 2 [...
HOMER3                0.872   Homer, neuronal immediate early gene, 3 isoform 3 [...
HOMER1                0.452   homer 1 
HOMER2                0.405   homer 2 isoform 2 
HOMER2                0.399   homer 2 isoform 1 
HOMER2                0.320   homer 2 isoform 4 
HOMER2                0.314   homer 2 isoform 3 
ENAH                  0.082   enabled homolog isoform a 
ENAH                  0.082   enabled homolog isoform b 
VASP                  0.051   vasodilator-stimulated phosphoprotein 
CDC42BPG              0.048   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
DEF6                  0.046   differentially expressed in FDCP 6 homolog 
ANKRD24               0.045   ankyrin repeat domain 24 
RP1L1                 0.045   retinitis pigmentosa 1-like 1 
FYCO1                 0.043   FYVE and coiled-coil domain containing 1 
MYH7B                 0.043   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
CROCC                 0.040   ciliary rootlet coiled-coil 
NUMA1                 0.040   nuclear mitotic apparatus protein 1 
PLEC1                 0.040   plectin 1 isoform 11 
PLEC1                 0.040   plectin 1 isoform 10 
PLEC1                 0.040   plectin 1 isoform 8 
PLEC1                 0.040   plectin 1 isoform 7 
PLEC1                 0.040   plectin 1 isoform 6 
PLEC1                 0.040   plectin 1 isoform 3 
PLEC1                 0.040   plectin 1 isoform 2 
PLEC1                 0.040   plectin 1 isoform 1 
EVL                   0.040   Enah/Vasp-like 
CCDC88B               0.040   coiled-coil domain containing 88 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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