Guide to the Human Genome
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Name: PLEC1 Sequence: fasta or formatted (4525aa) NCBI GI: 41322908
Description:

plectin 1 isoform 3

Referenced in:

Ribosomes
Spectrin and Plectin Families

Other entries for this name:
alt prot [4515aa] plectin 1 isoform 7
alt prot [4533aa] plectin 1 isoform 2
alt prot [4551aa] plectin 1 isoform 10
alt prot [4684aa] plectin 1 isoform 6
alt prot [4547aa] plectin 1 isoform 8
alt prot [4547aa] plectin 1 isoform 11
alt prot [4574aa] plectin 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2        506           4
 C cysteine            0.8         34           3
 D aspartate           4.2        191           2
 E glutamate          12.8        579           4
 F phenylalanine       2.0         89           2
 G glycine             5.0        225           3
 H histidine           1.6         74           2
 I isoleucine          3.3        149           5
 K lysine              5.4        243           2
 L leucine            12.0        541           4
 M methionine          1.3         59           1
 N asparagine          1.3         60           1
 P proline             2.7        124           3
 Q glutamine           8.6        387           4
 R arginine            9.5        432           4
 S serine              5.7        257           4
 T threonine           4.5        203           2
 V valine              5.5        247           2
 W tryptophan          0.7         30           1
 Y tyrosine            2.1         95           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plectin 1 isoform 3 
PLEC1                 0.997   plectin 1 isoform 11 
PLEC1                 0.997   plectin 1 isoform 2 
PLEC1                 0.997   plectin 1 isoform 1 
PLEC1                 0.997   plectin 1 isoform 8 
PLEC1                 0.997   plectin 1 isoform 10 
PLEC1                 0.997   plectin 1 isoform 7 
PLEC1                 0.997   plectin 1 isoform 6 
LOC652460             0.271   PREDICTED: similar to plectin 1, partial 
MACF1                 0.157   microfilament and actin filament cross-linker protei...
EPPK1                 0.144   epiplakin 1 
DSP                   0.109   desmoplakin isoform II 
DSP                   0.109   desmoplakin isoform I 
DST                   0.104   dystonin isoform 1e precursor 
DST                   0.097   dystonin isoform 4 
DST                   0.097   dystonin isoform 3 
DST                   0.097   dystonin isoform 2 
DST                   0.097   dystonin isoform 1 
DST                   0.097   dystonin isoform 1eA precursor 
DST                   0.088   dystonin isoform 1eB precursor 
SPTBN2                0.047   spectrin, beta, non-erythrocytic 2 
PPL                   0.045   periplakin 
SPTBN1                0.044   spectrin, beta, non-erythrocytic 1 isoform 1 
SPTBN1                0.043   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTB                  0.041   spectrin beta isoform a 
SPTB                  0.041   spectrin beta isoform b 
SPTBN5                0.039   spectrin, beta, non-erythrocytic 5 
TCHH                  0.038   trichohyalin 
EVPL                  0.038   envoplakin 
SPTBN4                0.033   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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