Guide to the Human Genome
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Name: SLC5A7 Sequence: fasta or formatted (580aa) NCBI GI: 11141885
Description:

solute carrier family 5 (choline transporter), member 7

Referenced in:

Acetylcholine
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         57           3
 C cysteine            0.9          5           1
 D aspartate           4.0         23           2
 E glutamate           3.3         19           2
 F phenylalanine       5.9         34           2
 G glycine             8.4         49           3
 H histidine           0.9          5           1
 I isoleucine          7.8         45           2
 K lysine              3.3         19           1
 L leucine            11.7         68           3
 M methionine          3.1         18           1
 N asparagine          2.4         14           1
 P proline             4.1         24           2
 Q glutamine           2.9         17           2
 R arginine            2.1         12           1
 S serine              8.3         48           4
 T threonine           5.7         33           2
 V valine              8.1         47           2
 W tryptophan          2.1         12           1
 Y tyrosine            5.3         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 5 (choline transporter), membe... 
SLC5A11               0.061   solute carrier family 5 (sodium/glucose cotransporte...
SLC5A2                0.061   solute carrier family 5 (sodium/glucose cotransporter...
SLC5A1                0.060   solute carrier family 5 (sodium/glucose cotransporter...
SLC5A4                0.059   solute carrier family 5 (low affinity glucose cotran...
SLC5A10               0.052   solute carrier family 5 (sodium/glucose cotransport...
SLC5A3                0.050   solute carrier family 5 (inositol transporters), me...
SLC5A9                0.049   solute carrier family 5 (sodium/glucose cotransport...
SLC5A10               0.047   solute carrier family 5 (sodium/glucose cotransport...
SLC5A5                0.046   solute carrier family 5 (sodium iodide symporter), me...
SLC5A9                0.042   solute carrier family 5 (sodium/glucose cotransport...
SLC5A12               0.040   solute carrier family 5 (sodium/glucose cotransport...
SLC5A8                0.037   solute carrier family 5 (iodide transporter), membe...
SLC5A6                0.029   solute carrier family 5 (sodium-dependent vitamin tr...
OR5D13                0.005   olfactory receptor, family 5, subfamily D, member 13...
IQGAP1                0.004   IQ motif containing GTPase activating protein 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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