Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC5A4 Sequence: fasta or formatted (659aa) NCBI GI: 14140236
Description:

solute carrier family 5 (low affinity glucose cotransporter), member 4

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         50           2
 C cysteine            2.7         18           1
 D aspartate           3.3         22           2
 E glutamate           4.6         30           4
 F phenylalanine       4.7         31           2
 G glycine             7.6         50           2
 H histidine           1.4          9           1
 I isoleucine          8.5         56           2
 K lysine              3.8         25           2
 L leucine            11.7         77           3
 M methionine          4.4         29           1
 N asparagine          2.4         16           1
 P proline             4.2         28           3
 Q glutamine           1.8         12           1
 R arginine            3.0         20           1
 S serine              7.4         49           2
 T threonine           6.5         43           3
 V valine              8.3         55           3
 W tryptophan          1.8         12           2
 Y tyrosine            4.1         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 5 (low affinity glucose cotran... 
SLC5A1                0.732   solute carrier family 5 (sodium/glucose cotransporter...
SLC5A2                0.588   solute carrier family 5 (sodium/glucose cotransporter...
SLC5A9                0.516   solute carrier family 5 (sodium/glucose cotransport...
SLC5A9                0.505   solute carrier family 5 (sodium/glucose cotransport...
SLC5A11               0.480   solute carrier family 5 (sodium/glucose cotransporte...
SLC5A10               0.445   solute carrier family 5 (sodium/glucose cotransport...
SLC5A10               0.439   solute carrier family 5 (sodium/glucose cotransport...
SLC5A3                0.423   solute carrier family 5 (inositol transporters), me...
SLC5A12               0.083   solute carrier family 5 (sodium/glucose cotransport...
SLC5A6                0.070   solute carrier family 5 (sodium-dependent vitamin tr...
SLC5A5                0.067   solute carrier family 5 (sodium iodide symporter), me...
SLC5A8                0.058   solute carrier family 5 (iodide transporter), membe...
SLC5A7                0.051   solute carrier family 5 (choline transporter), membe...
SLC24A4               0.008   solute carrier family 24 member 4 isoform 3 
SLC24A4               0.008   solute carrier family 24 member 4 isoform 2 precurso...
SLC24A4               0.008   solute carrier family 24 member 4 isoform 1 precurso...
SLC28A3               0.005   concentrative Na+-nucleoside cotransporter 
SLC6A11               0.005   solute carrier family 6 (neurotransmitter transporter...
HTATSF1               0.005   HIV-1 Tat specific factor 1 
HTATSF1               0.005   HIV-1 Tat specific factor 1 
CLDN16                0.004   claudin 16 
RPS8                  0.004   ribosomal protein S8 
OR10A3                0.004   olfactory receptor, family 10, subfamily A, member 3...
PHTF1                 0.004   putative homeodomain transcription factor 1 
C12orf51              0.004   chromosome 12 open reading frame 51 
SLC24A3               0.004   solute carrier family 24 (sodium/potassium/calcium e...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press