Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC5A3 Sequence: fasta or formatted (718aa) NCBI GI: 110835708
Description:

solute carrier family 5 (inositol transporters), member 3

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         57           2
 C cysteine            2.1         15           1
 D aspartate           3.3         24           2
 E glutamate           5.0         36           3
 F phenylalanine       5.2         37           2
 G glycine             7.4         53           2
 H histidine           1.0          7           1
 I isoleucine          8.5         61           2
 K lysine              4.3         31           2
 L leucine            11.4         82           4
 M methionine          4.3         31           2
 N asparagine          3.5         25           2
 P proline             3.9         28           3
 Q glutamine           2.6         19           1
 R arginine            4.0         29           2
 S serine              7.1         51           2
 T threonine           4.9         35           3
 V valine              7.9         57           2
 W tryptophan          1.9         14           1
 Y tyrosine            3.6         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 5 (inositol transporters), me... 
SLC5A11               0.436   solute carrier family 5 (sodium/glucose cotransporte...
SLC5A9                0.427   solute carrier family 5 (sodium/glucose cotransport...
SLC5A1                0.427   solute carrier family 5 (sodium/glucose cotransporter...
SLC5A9                0.417   solute carrier family 5 (sodium/glucose cotransport...
SLC5A2                0.416   solute carrier family 5 (sodium/glucose cotransporter...
SLC5A10               0.407   solute carrier family 5 (sodium/glucose cotransport...
SLC5A10               0.401   solute carrier family 5 (sodium/glucose cotransport...
SLC5A4                0.390   solute carrier family 5 (low affinity glucose cotran...
SLC5A12               0.061   solute carrier family 5 (sodium/glucose cotransport...
SLC5A5                0.055   solute carrier family 5 (sodium iodide symporter), me...
SLC5A8                0.049   solute carrier family 5 (iodide transporter), membe...
SLC5A6                0.046   solute carrier family 5 (sodium-dependent vitamin tr...
SLC5A7                0.040   solute carrier family 5 (choline transporter), membe...
SLC6A13               0.013   solute carrier family 6 (neurotransmitter transporte...
TSPAN8                0.009   transmembrane 4 superfamily member 3 
SLC6A1                0.008   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.006   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.006   solute carrier family 6 (neurotransmitter transporte...
SLC6A11               0.005   solute carrier family 6 (neurotransmitter transporter...
TBX2                  0.005   T-box 2 
GNAT3                 0.005   guanine nucleotide binding protein, alpha transduci...
CYP2C18               0.005   cytochrome P450 family 2 subfamily C polypeptide 18...
CYP2C18               0.005   cytochrome P450 family 2 subfamily C polypeptide 18 ...
DNAH12                0.004   dynein heavy chain domain 2 isoform 1 
SLC16A6               0.004   solute carrier family 16, member 6 
FAM47C                0.004   hypothetical protein LOC442444 
TBX3                  0.004   T-box 3 protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press