Guide to the Human Genome
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Name: GALNT13 Sequence: fasta or formatted (556aa) NCBI GI: 145309313
Description:

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         21           3
 C cysteine            2.9         16           1
 D aspartate           6.5         36           2
 E glutamate           7.0         39           2
 F phenylalanine       4.0         22           2
 G glycine             6.5         36           2
 H histidine           1.8         10           2
 I isoleucine          5.2         29           2
 K lysine              5.6         31           2
 L leucine             9.9         55           3
 M methionine          3.6         20           1
 N asparagine          5.4         30           2
 P proline             4.1         23           1
 Q glutamine           2.5         14           2
 R arginine            7.4         41           2
 S serine              5.8         32           1
 T threonine           4.9         27           1
 V valine              7.7         43           2
 W tryptophan          2.0         11           1
 Y tyrosine            3.6         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac... 
GALNT1                0.867   polypeptide N-acetylgalactosaminyltransferase 1 [Hom...
GALNT2                0.375   polypeptide N-acetylgalactosaminyltransferase 2 [Homo...
GALNT6                0.365   polypeptide N-acetylgalactosaminyltransferase 6 [Ho...
GALNT4                0.364   polypeptide N-acetylgalactosaminyltransferase 4 [Hom...
GALNT12               0.358   N-acetylgalactosaminyltransferase 12 
GALNT11               0.354   N-acetylgalactosaminyltransferase 11 
GALNT10               0.350   GalNAc transferase 10 isoform a 
GALNT3                0.343   polypeptide N-acetylgalactosaminyltransferase 3 [Ho...
GALNTL6               0.340   N-acetylgalactosaminyltransferase-like 6 
GALNT5                0.328   N-acetylgalactosaminyltransferase 5 
GALNT14               0.328   N-acetylgalactosaminyltransferase 14 
GALNT7                0.309   polypeptide N-acetylgalactosaminyltransferase 7 [Ho...
GALNTL1               0.305   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
GALNT9                0.288   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
WBSCR17               0.270   UDP-GalNAc:polypeptide N-acetylgalactosaminyltransfe...
GALNTL5               0.266   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
GALNTL4               0.256   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNTL2               0.254   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNT8                0.242   polypeptide N-acetylgalactosaminyltransferase 8 [Homo...
GALNT10               0.113   GalNAc transferase 10 isoform b 
GALNT9                0.079   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
TRMT61B               0.004   tRNA methyltransferase 61 homolog B 
B4GALNT4              0.004   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
NAGPA                 0.004   N-acetylglucosamine-1-phosphodiester alpha-N-acetylg...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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