Guide to the Human Genome
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Name: GALNT1 Sequence: fasta or formatted (559aa) NCBI GI: 13124891
Description:

polypeptide N-acetylgalactosaminyltransferase 1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         20           2
 C cysteine            2.9         16           1
 D aspartate           5.9         33           2
 E glutamate           6.6         37           2
 F phenylalanine       4.3         24           2
 G glycine             6.6         37           2
 H histidine           2.7         15           2
 I isoleucine          5.9         33           2
 K lysine              6.4         36           2
 L leucine             8.8         49           3
 M methionine          3.2         18           1
 N asparagine          5.0         28           2
 P proline             5.0         28           1
 Q glutamine           3.4         19           2
 R arginine            6.4         36           2
 S serine              5.4         30           2
 T threonine           5.0         28           2
 V valine              7.9         44           2
 W tryptophan          2.0         11           1
 Y tyrosine            3.0         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polypeptide N-acetylgalactosaminyltransferase 1 [Hom... 
GALNT13               0.857   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNT2                0.373   polypeptide N-acetylgalactosaminyltransferase 2 [Homo...
GALNT6                0.354   polypeptide N-acetylgalactosaminyltransferase 6 [Ho...
GALNT11               0.354   N-acetylgalactosaminyltransferase 11 
GALNT4                0.354   polypeptide N-acetylgalactosaminyltransferase 4 [Hom...
GALNT10               0.351   GalNAc transferase 10 isoform a 
GALNT3                0.344   polypeptide N-acetylgalactosaminyltransferase 3 [Ho...
GALNT12               0.342   N-acetylgalactosaminyltransferase 12 
GALNTL6               0.339   N-acetylgalactosaminyltransferase-like 6 
GALNT5                0.329   N-acetylgalactosaminyltransferase 5 
GALNT14               0.322   N-acetylgalactosaminyltransferase 14 
GALNT7                0.312   polypeptide N-acetylgalactosaminyltransferase 7 [Ho...
GALNTL1               0.293   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
GALNT9                0.274   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
WBSCR17               0.270   UDP-GalNAc:polypeptide N-acetylgalactosaminyltransfe...
GALNTL5               0.265   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
GALNTL2               0.259   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNTL4               0.253   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNT8                0.236   polypeptide N-acetylgalactosaminyltransferase 8 [Homo...
GALNT10               0.109   GalNAc transferase 10 isoform b 
GALNT9                0.076   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
TRIM22                0.005   tripartite motif-containing 22 
ZBTB11                0.004   zinc finger protein ZNF-U69274 
UTP14C                0.004   UTP14, U3 small nucleolar ribonucleoprotein, homolog...
APBB1IP               0.004   amyloid beta (A4) precursor protein-binding, family ...
DHX8                  0.004   DEAH (Asp-Glu-Ala-His) box polypeptide 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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