Guide to the Human Genome
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Name: NAGPA Sequence: fasta or formatted (515aa) NCBI GI: 66346700
Description:

N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase precursor

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         43           2
 C cysteine            5.4         28           1
 D aspartate           4.9         25           3
 E glutamate           6.4         33           3
 F phenylalanine       3.7         19           2
 G glycine            10.5         54           3
 H histidine           3.5         18           2
 I isoleucine          1.7          9           1
 K lysine              1.6          8           1
 L leucine             9.9         51           3
 M methionine          1.0          5           1
 N asparagine          4.1         21           1
 P proline             5.8         30           4
 Q glutamine           3.9         20           1
 R arginine            8.2         42           3
 S serine              6.4         33           3
 T threonine           6.0         31           1
 V valine              5.6         29           2
 W tryptophan          1.9         10           1
 Y tyrosine            1.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   N-acetylglucosamine-1-phosphodiester alpha-N-acetylg... 
TNC                   0.057   tenascin C precursor 
MEGF6                 0.055   EGF-like-domain, multiple 3 
ODZ1                  0.055   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.055   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.055   odz, odd Oz/ten-m homolog 1 isoform 1 
ODZ2                  0.053   odz, odd Oz/ten-m homolog 2 
MEGF11                0.051   multiple EGF-like-domains 11 
PEAR1                 0.051   platelet endothelial aggregation receptor 1 
ODZ3                  0.046   odz, odd Oz/ten-m homolog 3 
TNXB                  0.046   tenascin XB isoform 1 precursor 
SCARF1                0.043   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.043   scavenger receptor class F, member 1 isoform 1 precu...
MEGF10                0.043   multiple EGF-like-domains 10 
SCARF1                0.043   scavenger receptor class F, member 1 isoform 5 prec...
ODZ4                  0.042   odz, odd Oz/ten-m homolog 4 
TNR                   0.039   tenascin R 
SCARF2                0.039   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.039   scavenger receptor class F, member 2 isoform 2 [Homo...
LAMA5                 0.037   laminin alpha 5 
DLL1                  0.036   delta-like 1 
TNN                   0.036   tenascin N 
NOTCH2                0.030   notch 2 preproprotein 
TIE1                  0.030   tyrosine kinase with immunoglobulin-like and EGF-like...
ITGBL1                0.030   integrin, beta-like 1 (with EGF-like repeat domains) ...
STAB1                 0.029   stabilin 1 precursor 
TEK                   0.029   TEK tyrosine kinase, endothelial precursor 
VWDE                  0.028   von Willebrand factor D and EGF domains 
NOTCH1                0.028   notch1 preproprotein 
NOTCH4                0.028   notch4 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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