Guide to the Human Genome
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Name: RHOBTB1 Sequence: fasta or formatted (696aa) NCBI GI: 28629866
Description:

Rho-related BTB domain containing 1

Referenced in:

Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         55           2
 C cysteine            2.9         20           1
 D aspartate           5.5         38           2
 E glutamate           7.8         54           3
 F phenylalanine       4.2         29           1
 G glycine             4.3         30           2
 H histidine           3.0         21           2
 I isoleucine          4.7         33           1
 K lysine              6.2         43           2
 L leucine             9.8         68           2
 M methionine          2.6         18           2
 N asparagine          4.0         28           1
 P proline             5.6         39           3
 Q glutamine           4.3         30           1
 R arginine            6.2         43           2
 S serine              6.0         42           3
 T threonine           3.6         25           2
 V valine              7.0         49           3
 W tryptophan          1.7         12           1
 Y tyrosine            2.7         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rho-related BTB domain containing 1 
RHOBTB2               0.677   Rho-related BTB domain containing 2 isoform 3 [Homo...
RHOBTB2               0.677   Rho-related BTB domain containing 2 isoform 2 [Homo...
RHOBTB2               0.677   Rho-related BTB domain containing 2 isoform 1 [Homo...
RAC1                  0.075   ras-related C3 botulinum toxin substrate 1 isoform Ra...
RAC3                  0.074   ras-related C3 botulinum toxin substrate 3 (rho famil...
RHOBTB3               0.073   rho-related BTB domain containing 3 
RAC2                  0.072   ras-related C3 botulinum toxin substrate 2 
RHOG                  0.070   ras homolog gene family, member G 
CDC42                 0.069   cell division cycle 42 isoform 2 
CDC42                 0.069   cell division cycle 42 isoform 1 
CDC42                 0.069   cell division cycle 42 isoform 1 
RAC1                  0.067   ras-related C3 botulinum toxin substrate 1 isoform Ra...
RHOA                  0.066   ras homolog gene family, member A 
RHOQ                  0.062   ras-like protein TC10 
RHOC                  0.059   ras homolog gene family, member C precursor 
RHOC                  0.059   ras homolog gene family, member C precursor 
RHOC                  0.059   ras homolog gene family, member C precursor 
RHOD                  0.059   ras homolog D 
RHOB                  0.056   ras homolog gene family, member B 
RHOU                  0.055   ras homolog gene family, member U 
RHOV                  0.054   ras homolog gene family, member V 
RHOJ                  0.052   ras homolog gene family, member J 
RND1                  0.049   GTP-binding protein RHO6 
RND2                  0.047   Rho family GTPase 2 
RHOH                  0.045   ras homolog gene family, member H 
RND3                  0.044   ras homolog gene family, member E 
RHOF                  0.041   ras homolog gene family, member F 
RABL2A                0.022   RAB, member of RAS oncogene family-like 2A 
RABL2A                0.022   RAB, member of RAS oncogene family-like 2A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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