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Search of human proteins with 28329436
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28329436 aprataxin isoform a [Homo sapiens]
(342 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28329436 aprataxin isoform a [Homo sapiens] 701 0.0
gi|28329430 aprataxin isoform b [Homo sapiens] 596 e-170
gi|28329433 aprataxin isoform c [Homo sapiens] 524 e-149
gi|28329427 aprataxin isoform d [Homo sapiens] 351 6e-97
gi|8923156 aprataxin isoform d [Homo sapiens] 351 6e-97
gi|31543419 polynucleotide kinase 3' phosphatase [Homo sapiens] 70 3e-12
gi|189217863 histidine triad nucleotide binding protein 3 [Homo ... 59 8e-09
gi|4885413 histidine triad nucleotide binding protein 1 [Homo sa... 47 2e-05
gi|14211923 PKCI-1-related HIT protein [Homo sapiens] 46 6e-05
gi|7661734 mRNA decapping enzyme [Homo sapiens] 38 0.011
gi|27734905 aprataxin and PNKP like factor [Homo sapiens] 34 0.22
gi|103472005 antigen identified by monoclonal antibody Ki-67 iso... 33 0.37
gi|57864582 hornerin [Homo sapiens] 31 1.4
gi|40217790 zinc finger protein 512 [Homo sapiens] 31 1.4
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens] 30 2.4
gi|38348206 Ras and Rab interactor-like [Homo sapiens] 30 3.1
gi|13376064 zinc finger protein 408 [Homo sapiens] 30 3.1
gi|118572606 hemicentin 1 [Homo sapiens] 30 4.1
gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo ... 30 4.1
gi|58331173 chaperonin containing TCP1, subunit 6B [Homo sapiens] 30 4.1
gi|218931253 diacylglycerol lipase, beta isoform 2 [Homo sapiens] 30 4.1
gi|218931251 diacylglycerol lipase, beta isoform 1 [Homo sapiens] 30 4.1
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 30 4.1
gi|7662010 zinc finger protein 516 [Homo sapiens] 29 5.3
gi|169171323 PREDICTED: similar to hCG19534 [Homo sapiens] 29 7.0
gi|169172183 PREDICTED: similar to hCG19534 [Homo sapiens] 29 7.0
gi|169170925 PREDICTED: similar to hCG19534 [Homo sapiens] 29 7.0
gi|239508729 PREDICTED: similar to hCG19534 [Homo sapiens] 29 7.0
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 29 7.0
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 29 7.0
>gi|28329436 aprataxin isoform a [Homo sapiens]
Length = 342
Score = 701 bits (1808), Expect = 0.0
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 60
MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ
Sbjct: 1 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 60
Query: 61 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 120
VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN
Sbjct: 61 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 120
Query: 121 SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 180
SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM
Sbjct: 121 SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 180
Query: 181 QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG 240
QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG
Sbjct: 181 QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG 240
Query: 241 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEA 300
SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEA
Sbjct: 241 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEA 300
Query: 301 GRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 342
GRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
Sbjct: 301 GRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 342
>gi|28329430 aprataxin isoform b [Homo sapiens]
Length = 306
Score = 596 bits (1536), Expect = e-170
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 60
MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ
Sbjct: 15 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 74
Query: 61 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 120
VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN
Sbjct: 75 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 134
Query: 121 SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 180
SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM
Sbjct: 135 SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 194
Query: 181 QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG 240
QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG
Sbjct: 195 QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG 254
Query: 241 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ 291
SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ
Sbjct: 255 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQ 305
>gi|28329433 aprataxin isoform c [Homo sapiens]
Length = 254
Score = 524 bits (1349), Expect = e-149
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 89 MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 148
MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS
Sbjct: 1 MVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCS 60
Query: 149 VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT 208
VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT
Sbjct: 61 VPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWT 120
Query: 209 SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF 268
SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF
Sbjct: 121 SISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDF 180
Query: 269 DSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPS 328
DSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPS
Sbjct: 181 DSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPS 240
Query: 329 IPQLKEHLRKHWTQ 342
IPQLKEHLRKHWTQ
Sbjct: 241 IPQLKEHLRKHWTQ 254
>gi|28329427 aprataxin isoform d [Homo sapiens]
Length = 168
Score = 351 bits (900), Expect = 6e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 175 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 234
MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
Query: 235 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 294
IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI
Sbjct: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 120
Query: 295 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 342
EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
Sbjct: 121 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 168
>gi|8923156 aprataxin isoform d [Homo sapiens]
Length = 168
Score = 351 bits (900), Expect = 6e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 175 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 234
MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV
Sbjct: 1 MQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV 60
Query: 235 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 294
IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI
Sbjct: 61 IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVI 120
Query: 295 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 342
EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
Sbjct: 121 EMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ 168
>gi|31543419 polynucleotide kinase 3' phosphatase [Homo sapiens]
Length = 521
Score = 70.1 bits (170), Expect = 3e-12
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 23 EAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQ 82
+A+V+GRGP T++TD+KCSR QV+L A+ V VKQ+GVNP++ + + E L
Sbjct: 29 QALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLG 88
Query: 83 PGQVLHMVNELYPYIVEFEE 102
G L++VN L+P + +EE
Sbjct: 89 VGDTLYLVNGLHPLTLRWEE 108
>gi|189217863 histidine triad nucleotide binding protein 3 [Homo
sapiens]
Length = 182
Score = 58.5 bits (140), Expect = 8e-09
Identities = 30/94 (31%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 176 QDPKMQVY--KDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEK 233
QDP ++ ++E ++ KD P A +H+LV+P I + + + ++ +EL+++M TVG+
Sbjct: 57 QDPGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKT 116
Query: 234 VIVDFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 265
++ + R+G+H P S+SH+HLHV++
Sbjct: 117 ILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLA 150
>gi|4885413 histidine triad nucleotide binding protein 1 [Homo
sapiens]
Length = 126
Score = 47.0 bits (110), Expect = 2e-05
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 170 GLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHT 229
G I + P +++D++ + D P+A H+LV+P IS + + LL H+
Sbjct: 20 GKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMI 79
Query: 230 VGEKVIVDFAGSSKLRFRL--GYHAIPSMSHVHLHVI 264
VG+K D + R + G S+ HVHLHV+
Sbjct: 80 VGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVL 116
>gi|14211923 PKCI-1-related HIT protein [Homo sapiens]
Length = 163
Score = 45.8 bits (107), Expect = 6e-05
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 128 AAQEAEAGTGLEPGSNSGQCSVP----LKKGKDAPIKKESLGHWSQGLKISMQDPKMQVY 183
AA+ A A TG+ G G V + K + A + +S+ L S+ P +Y
Sbjct: 13 AARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRILDKSL--PADILY 70
Query: 184 KDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV--IVDFAGS 241
+D+Q +V +D P+A H+LV+P I + E +LL H+ V ++
Sbjct: 71 EDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDG 130
Query: 242 SKLRFRLGYHAIPSMSHVHLHVI 264
+L G S+ H+H+HV+
Sbjct: 131 YRLVINDGKLGAQSVYHLHIHVL 153
>gi|7661734 mRNA decapping enzyme [Homo sapiens]
Length = 337
Score = 38.1 bits (87), Expect = 0.011
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 210 ISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFD 269
I SL+ + EHL LL+++ G++ I+ R+ H +PS H+H+H + F+
Sbjct: 227 IRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFE 286
Query: 270 SP 271
+P
Sbjct: 287 AP 288
>gi|27734905 aprataxin and PNKP like factor [Homo sapiens]
Length = 511
Score = 33.9 bits (76), Expect = 0.22
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 26 VIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQP 83
VIGRGP ITDK+ SR+ L E G +++K + NP S K Q + L+P
Sbjct: 24 VIGRGPLLGITDKRVSRRHAIL--EVAGGQLRIKPIHTNPCFYQS--SEKSQLLPLKP 77
>gi|103472005 antigen identified by monoclonal antibody Ki-67
isoform 1 [Homo sapiens]
Length = 3256
Score = 33.1 bits (74), Expect = 0.37
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 64 NPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRK-------RK 116
NPT ++ VI D+ V+L+ G V+ +++ + Y E + + E RK R+
Sbjct: 67 NPTQVNGSVI--DEPVRLKHGDVITIIDRSFRYENESLQNGRK-STEFPRKIREQEPARR 123
Query: 117 RSGNSDSIERDA-AQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 170
S +S S + D AQ+++A + + G SG V +K K+ +S +QG
Sbjct: 124 VSRSSFSSDPDEKAQDSKAYSKITEGKVSGNPQVHIKNVKEDSTADDSKDSVAQG 178
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 31.2 bits (69), Expect = 1.4
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 118 SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 170
SG+S S E+ ++ ++ G + GS+SG S G+ ++SLGH G
Sbjct: 1891 SGHSSSYEQHGSRSGQSSRGEQHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 1940
Score = 30.4 bits (67), Expect = 2.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 118 SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 170
SG+S S E+ ++ ++ G GS+SG S G+ ++SLGH G
Sbjct: 1421 SGHSSSYEQHGSRSGQSSRGERHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 1470
Score = 30.4 bits (67), Expect = 2.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 118 SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 170
SG+S S E+ ++ ++ G GS+SG S G+ ++SLGH G
Sbjct: 2361 SGHSSSYEQHGSRSGQSSRGERHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 2410
Score = 28.9 bits (63), Expect = 7.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 118 SGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQG 170
SG+S S E+ ++ ++ + GS+SG S G+ ++SLGH G
Sbjct: 951 SGHSSSYEQHGSRSGQSSRSEQHGSSSGSSS---SYGQHGSGSRQSLGHGQHG 1000
>gi|40217790 zinc finger protein 512 [Homo sapiens]
Length = 567
Score = 31.2 bits (69), Expect = 1.4
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 209 SISSLKAVAREHLE-LLKHMHTVGEKVIVDFAGSSKLRFRLG--YHAIPSMSHVHLHVIS 265
S + +AV R+ +E L KHM +++ +LR G YH + + + + +
Sbjct: 170 SCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPILKAG 229
Query: 266 QDFDSPCLKNK-----------KHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLK 314
+ D P + + + + F + V++ G+ G EL K
Sbjct: 230 DEIDEPSERERLRTVLKRLGKLRCMRESCSSSFTSIMGYLYHVRKCGK-----GAAELEK 284
Query: 315 LPLRCHECQQLLPSIPQLKEHLR 337
+ L+CH C + S L HLR
Sbjct: 285 MTLKCHHCGKPYRSKAGLAYHLR 307
>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
Length = 543
Score = 30.4 bits (67), Expect = 2.4
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 76 DQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQEAEAG 135
D EV+ Q +H +L I E E E KN G + + I ++ +
Sbjct: 28 DSEVEFQLYSQIHYAQDLDDVIREEEHEEKNSG-NSESSSSKPNQKKLIVLSDSEVIQLS 86
Query: 136 TGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 180
G E + S + S+ KGK+ ++ + H GL S+Q ++
Sbjct: 87 DGSEVITLSDEDSIYRCKGKNVRVQAQENAH---GLSSSLQSNEL 128
>gi|38348206 Ras and Rab interactor-like [Homo sapiens]
Length = 452
Score = 30.0 bits (66), Expect = 3.1
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 61 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 120
+G D V IG+ Q+ PG+VL +VN+LY LETHR R
Sbjct: 29 LGPRDEHTDPVQIGRVQQDT--PGKVLSIVNQLY--------------LETHRGWGREQT 72
Query: 121 SDSIERDAAQ 130
E +AAQ
Sbjct: 73 PQETEPEAAQ 82
>gi|13376064 zinc finger protein 408 [Homo sapiens]
Length = 720
Score = 30.0 bits (66), Expect = 3.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 316 PLRCHECQQLLPSIPQLKEHLRKH 339
P RC C P +P+L+ HL H
Sbjct: 523 PYRCPHCADAFPQLPELRRHLISH 546
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 29.6 bits (65), Expect = 4.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 81 LQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIERDAAQE--------A 132
LQPGQ+ V+ L P+ + F G++ + K S N D + + E +
Sbjct: 444 LQPGQIPCSVDSLLPFTLSFVRNGVTLGVDQYLKESASVNLDIAKVTLSDEGFYECIAVS 503
Query: 133 EAGTG 137
AGTG
Sbjct: 504 SAGTG 508
>gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo
sapiens]
Length = 2146
Score = 29.6 bits (65), Expect = 4.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 218 REHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHA 252
REHLELL + V E + AGS R L ++A
Sbjct: 1885 REHLELLARLRGVPEAQVAQTAGSGLARLGLSWYA 1919
>gi|58331173 chaperonin containing TCP1, subunit 6B [Homo sapiens]
Length = 530
Score = 29.6 bits (65), Expect = 4.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 49 AECNKGYVKVKQVGVNPTSIDSV 71
A+ NKG+V + Q G++P S+DS+
Sbjct: 283 AQSNKGFVVINQKGIDPFSLDSL 305
>gi|218931253 diacylglycerol lipase, beta isoform 2 [Homo sapiens]
Length = 543
Score = 29.6 bits (65), Expect = 4.1
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 26 VIGRGPETKITDKKCSRQQVQLKAECNKGYVKV-------KQVGVNPTSIDSVVIGKDQE 78
VI R T + D K R+ +++ A CNK K+ + G NP ++ + + G DQE
Sbjct: 367 VIPRLSVTNLEDLK--RRILRVVAHCNKPKYKILLHGLWYELFGGNPNNLPTELDGGDQE 424
Query: 79 VKLQP 83
V QP
Sbjct: 425 VLTQP 429
>gi|218931251 diacylglycerol lipase, beta isoform 1 [Homo sapiens]
Length = 672
Score = 29.6 bits (65), Expect = 4.1
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 26 VIGRGPETKITDKKCSRQQVQLKAECNKGYVKV-------KQVGVNPTSIDSVVIGKDQE 78
VI R T + D K R+ +++ A CNK K+ + G NP ++ + + G DQE
Sbjct: 496 VIPRLSVTNLEDLK--RRILRVVAHCNKPKYKILLHGLWYELFGGNPNNLPTELDGGDQE 553
Query: 79 VKLQP 83
V QP
Sbjct: 554 VLTQP 558
>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
Length = 5120
Score = 29.6 bits (65), Expect = 4.1
Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 9/156 (5%)
Query: 15 QRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIG 74
+RI+L V+ G +T + LKA ++ ++ + + + ++ +
Sbjct: 2219 ERIQLSDCYRGVVFDGLDTLFAQNAAAALLCLLKAIGSREHIYILNMAQDYAAMKAQEKA 2278
Query: 75 K-DQEVKLQPG-------QVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGNSDSIER 126
K +QE + G ++ +M E Y + E E+ + G++ + ++ + + +
Sbjct: 2279 KKEQEERKHKGALEKEKERLQNMDEEEYDALTEEEKLTFDRGIQQALRERKKREQERLAK 2338
Query: 127 DAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKE 162
+ QE + LE + +KKGK PIK+E
Sbjct: 2339 EM-QEKKLQQELERQKEEDELKRRVKKGKQGPIKEE 2373
>gi|7662010 zinc finger protein 516 [Homo sapiens]
Length = 1163
Score = 29.3 bits (64), Expect = 5.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 300 AGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 339
+G V +G PEL C C Q LK H++KH
Sbjct: 231 SGEACVENGKPELSPGEFPCEVCGQAFSQTWFLKAHMKKH 270
>gi|169171323 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 7.0
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 255 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 305
S S H H+ ++QDF S K W+S NTE + ++ ++ +T
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170
Query: 306 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 339
R + P +C EC++ L H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204
>gi|169172183 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 7.0
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 255 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 305
S S H H+ ++QDF S K W+S NTE + ++ ++ +T
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170
Query: 306 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 339
R + P +C EC++ L H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204
>gi|169170925 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 7.0
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 255 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 305
S S H H+ ++QDF S K W+S NTE + ++ ++ +T
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170
Query: 306 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 339
R + P +C EC++ L H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204
>gi|239508729 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 7.0
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 255 SMSHVHLHV-ISQDFDSPCLKNK-------KHWNSF-NTEYFLESQAVIEMVQEAGRVTV 305
S S H H+ ++QDF S K W+S NTE + ++ ++ +T
Sbjct: 112 SASGKHEHINLTQDFQSSICKESLMDLSLLNKWDSIPNTEESYKCDVCEKVFHQSSALT- 170
Query: 306 RDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKH 339
R + P +C EC++ L H R H
Sbjct: 171 RHQRIHTREKPYKCKECEKRFSQSSSLSRHKRIH 204
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 28.9 bits (63), Expect = 7.0
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 103 EAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKE 162
E+ P + +K+K+ D +E + E G S + P K K I+K+
Sbjct: 264 ESTEPQKQCSKKKKKR---DRVEASSLPEVRTGKRKRSSSEDAESLAPRSKVKKI-IQKD 319
Query: 163 SLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLE 222
+ S+ K + +D ++ +++ +KD SSL R+H +
Sbjct: 320 IIKEASEASKEN-RDIEISTEEEKDTGDLKD-----------------SSLLKTKRKHKK 361
Query: 223 LLKHMHTVGEKVI 235
K H +GE+VI
Sbjct: 362 KHKERHKMGEEVI 374
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 28.9 bits (63), Expect = 7.0
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 103 EAKNPGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKE 162
E+ P + +K+K+ D +E + E G S + P K K I+K+
Sbjct: 264 ESTEPQKQCSKKKKKR---DRVEASSLPEVRTGKRKRSSSEDAESLAPRSKVKKI-IQKD 319
Query: 163 SLGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLE 222
+ S+ K + +D ++ +++ +KD SSL R+H +
Sbjct: 320 IIKEASEASKEN-RDIEISTEEEKDTGDLKD-----------------SSLLKTKRKHKK 361
Query: 223 LLKHMHTVGEKVI 235
K H +GE+VI
Sbjct: 362 KHKERHKMGEEVI 374
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,742,305
Number of Sequences: 37866
Number of extensions: 621058
Number of successful extensions: 4616
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 4562
Number of HSP's gapped (non-prelim): 68
length of query: 342
length of database: 18,247,518
effective HSP length: 103
effective length of query: 239
effective length of database: 14,347,320
effective search space: 3429009480
effective search space used: 3429009480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.