Guide to the Human Genome
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Name: HRNR Sequence: fasta or formatted (2850aa) NCBI GI: 57864582
Description:

hornerin

Referenced in:

Calmodulin and Calcium
Protein Composition and Structure
Skin and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.8         23           1
 C cysteine            0.6         16           1
 D aspartate           0.8         23           2
 E glutamate           2.7         76           2
 F phenylalanine       1.3         38           1
 G glycine            24.5        697           2
 H histidine           9.5        272           2
 I isoleucine          0.3          9           2
 K lysine              0.7         19           2
 L leucine             1.3         37           2
 M methionine          0.1          2           1
 N asparagine          0.5         15           1
 P proline             2.0         56           1
 Q glutamine           9.4        268           2
 R arginine            5.8        164           2
 S serine             33.6        957           4
 T threonine           1.5         42           1
 V valine              0.6         17           1
 W tryptophan          0.4         12           1
 Y tyrosine            3.8        107           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hornerin 
FLG2                  0.220   filaggrin family member 2 
FLG                   0.150   filaggrin 
DSPP                  0.040   dentin sialophosphoprotein preproprotein 
MUC12                 0.033   PREDICTED: mucin 12 
RPTN                  0.029   repetin 
RBMXL3                0.027   RNA binding motif protein, X-linked-like 3 
FUS                   0.019   fusion (involved in t(12;16) in malignant liposarcoma...
TAF15                 0.018   TBP-associated factor 15 isoform 1 
TAF15                 0.018   TBP-associated factor 15 isoform 2 
SRRM2                 0.017   splicing coactivator subunit SRm300 
MUC12                 0.017   PREDICTED: mucin 12 
MUC12                 0.017   PREDICTED: mucin 12, cell surface associated 
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
CRNN                  0.016   cornulin 
LOC100292655          0.016   PREDICTED: similar to armadillo repeat containing, ...
LOR                   0.016   loricrin 
TRO                   0.015   trophinin isoform 5 
LOC100286952          0.015   PREDICTED: hypothetical protein XP_002344252 
ARID1A                0.014   AT rich interactive domain 1A isoform a 
ARID1A                0.014   AT rich interactive domain 1A isoform b 
ARID1B                0.014   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
TNRC6C                0.014   trinucleotide repeat containing 6C isoform 1 
DMKN                  0.014   dermokine isoform 5 precursor 
DMKN                  0.013   dermokine isoform 4 precursor 
MED1                  0.013   mediator complex subunit 1 
DMKN                  0.013   dermokine isoform 3 precursor 
LOC100292370          0.013   PREDICTED: hypothetical protein 
DMKN                  0.013   dermokine isoform 2 precursor 
ARID1B                0.013   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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