Guide to the Human Genome
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Name: APTX Sequence: fasta or formatted (168aa) NCBI GI: 8923156
Description:

aprataxin isoform d

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt mRNA [168aa] aprataxin isoform d
alt prot [306aa] aprataxin isoform b
alt prot [254aa] aprataxin isoform c
alt prot [342aa] aprataxin isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          7           1
 C cysteine            1.8          3           1
 D aspartate           4.2          7           1
 E glutamate           6.5         11           1
 F phenylalanine       3.0          5           1
 G glycine             3.0          5           1
 H histidine           7.1         12           1
 I isoleucine          4.2          7           1
 K lysine              8.9         15           2
 L leucine            11.3         19           2
 M methionine          3.6          6           1
 N asparagine          1.8          3           1
 P proline             5.4          9           1
 Q glutamine           6.0         10           2
 R arginine            4.8          8           1
 S serine              7.1         12           2
 T threonine           3.0          5           1
 V valine              8.9         15           3
 W tryptophan          2.4          4           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aprataxin isoform d 
APTX                  1.000   aprataxin isoform a 
APTX                  1.000   aprataxin isoform c 
APTX                  1.000   aprataxin isoform d 
APTX                  0.678   aprataxin isoform b 
HINT3                 0.104   histidine triad nucleotide binding protein 3 
HINT1                 0.064   histidine triad nucleotide binding protein 1 
HINT2                 0.052   PKCI-1-related HIT protein 
DCPS                  0.040   mRNA decapping enzyme 
ZNF512                0.018   zinc finger protein 512 
ZNF408                0.015   zinc finger protein 408 
ABCA7                 0.015   ATP-binding cassette, sub-family A, member 7 
ZNF516                0.012   zinc finger protein 516 
LOC100131257          0.012   PREDICTED: similar to hCG19534 
LOC100131257          0.012   PREDICTED: similar to hCG19534 
LOC100131257          0.012   PREDICTED: similar to hCG19534 
LOC100131257          0.012   PREDICTED: similar to hCG19534 
ZIM3                  0.012   zinc finger, imprinted 3 
ZNF528                0.012   zinc finger protein 528 
ZBTB16                0.009   promyelocytic leukemia zinc finger protein 
ZBTB16                0.009   promyelocytic leukemia zinc finger protein 
ZNF317                0.009   zinc finger protein 317 
HIC1                  0.009   hypermethylated in cancer 1 isoform 2 
HIC1                  0.009   hypermethylated in cancer 1 isoform 1 
LOC100291520          0.009   PREDICTED: hypothetical protein XP_002347973 isofor...
LOC100291520          0.009   PREDICTED: hypothetical protein XP_002347974 isofor...
LOC100291520          0.009   PREDICTED: hypothetical protein XP_002347975 isofor...
ZBTB17                0.009   zinc finger and BTB domain containing 17 
PCNXL3                0.009   pecanex-like 3 
ZNF442                0.009   zinc finger protein 442 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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