Guide to the Human Genome
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Name: ZBTB16 Sequence: fasta or formatted (673aa) NCBI GI: 21359888
Description:

promyelocytic leukemia zinc finger protein

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [673aa] promyelocytic leukemia zinc finger protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         50           2
 C cysteine            3.7         25           1
 D aspartate           4.2         28           2
 E glutamate           8.5         57           4
 F phenylalanine       3.0         20           1
 G glycine             7.6         51           3
 H histidine           5.1         34           1
 I isoleucine          3.1         21           1
 K lysine              5.5         37           2
 L leucine             8.9         60           2
 M methionine          3.6         24           2
 N asparagine          1.5         10           1
 P proline             5.8         39           3
 Q glutamine           5.2         35           2
 R arginine            4.5         30           1
 S serine              8.8         59           2
 T threonine           6.1         41           1
 V valine              4.5         30           2
 W tryptophan          0.1          1           1
 Y tyrosine            3.1         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   promyelocytic leukemia zinc finger protein 
ZBTB16                1.000   promyelocytic leukemia zinc finger protein 
LOC100287429          0.158   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.158   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.158   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.158   zinc finger protein 84 
ZNF84                 0.158   zinc finger protein 84 
ZNF419                0.151   zinc finger protein 419 isoform 7 
ZNF419                0.151   zinc finger protein 419 isoform 6 
ZNF419                0.151   zinc finger protein 419 isoform 5 
ZNF419                0.151   zinc finger protein 419 isoform 4 
ZNF419                0.151   zinc finger protein 419 isoform 3 
ZNF419                0.151   zinc finger protein 419 isoform 1 
ZNF419                0.151   zinc finger protein 419 isoform 2 
ZNF773                0.149   zinc finger protein 773 
ZNF782                0.148   zinc finger protein 782 
ZNF397                0.146   zinc finger protein 397 isoform 1 
ZNF93                 0.146   zinc finger protein 93 
ZNF436                0.146   zinc finger protein 436 
ZNF12                 0.146   zinc finger protein 12 isoform b 
ZNF658                0.146   zinc finger protein 658 
ZNF12                 0.146   zinc finger protein 12 isoform a 
ZNF436                0.146   zinc finger protein 436 
ZNF135                0.146   zinc finger protein 135 
LOC344065             0.145   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.145   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.145   PREDICTED: similar to zinc finger protein 570 [Homo...
ZFP28                 0.145   zinc finger protein 28 
ZFP2                  0.145   zinc finger protein 2 homolog 
ZNF596                0.144   zinc finger protein 596 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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