Guide to the Human Genome
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Name: HMCN1 Sequence: fasta or formatted (5635aa) NCBI GI: 118572606
Description:

hemicentin 1

Referenced in:

Protein Composition and Structure
Epidermal Growth Factor
Gene Structure
Additional Immunoglobulin-related Receptors
Extracellular Matrix
Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2        351           2
 C cysteine            3.2        180           1
 D aspartate           4.7        265           3
 E glutamate           5.5        311           2
 F phenylalanine       2.1        117           2
 G glycine             7.8        437           3
 H histidine           2.2        124           2
 I isoleucine          6.7        375           2
 K lysine              4.6        262           3
 L leucine             7.6        430           3
 M methionine          1.3         73           1
 N asparagine          5.4        306           3
 P proline             6.9        386           3
 Q glutamine           4.1        231           2
 R arginine            4.4        249           3
 S serine              7.8        440           3
 T threonine           7.2        403           2
 V valine              8.1        457           3
 W tryptophan          1.3         74           1
 Y tyrosine            2.9        164           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hemicentin 1 
HMCN2                 0.307   PREDICTED: hemicentin 2 
HMCN2                 0.210   PREDICTED: hemicentin 2 
HMCN2                 0.207   PREDICTED: hemicentin 2 
TTN                   0.107   titin isoform N2-A 
LOC100292387          0.080   PREDICTED: similar to hemicentin 2 
LOC100289200          0.066   PREDICTED: hypothetical protein XP_002342997 
OBSCN                 0.047   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.047   obscurin, cytoskeletal calmodulin and titin-interac...
HSPG2                 0.043   heparan sulfate proteoglycan 2 
IGSF10                0.027   immunoglobulin superfamily, member 10 
MXRA5                 0.026   adlican 
TTN                   0.026   titin isoform novex-1 
TTN                   0.025   titin isoform N2-B 
OBSL1                 0.024   obscurin-like 1 
TTN                   0.024   titin isoform novex-2 
TTN                   0.023   titin isoform novex-3 
FBLN1                 0.023   fibulin 1 isoform D 
FBLN2                 0.022   fibulin 2 isoform a precursor 
FBLN2                 0.022   fibulin 2 isoform b precursor 
FBLN1                 0.022   fibulin 1 isoform C precursor 
SEMA5A                0.021   semaphorin 5A 
FBLN1                 0.021   fibulin 1 isoform B precursor 
FBLN1                 0.021   fibulin 1 isoform A precursor 
SEMA5B                0.021   semaphorin 5B isoform 1 
FBN1                  0.020   fibrillin 1 precursor 
FBN2                  0.020   fibrillin 2 precursor 
FBN3                  0.020   fibrillin 3 precursor 
BAI1                  0.019   brain-specific angiogenesis inhibitor 1 precursor [...
LTBP4                 0.019   latent transforming growth factor beta binding prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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