Guide to the Human Genome
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Name: LARP7 Sequence: fasta or formatted (582aa) NCBI GI: 109809741
Description:

La ribonucleoprotein domain family, member 7

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt mRNA [582aa] La ribonucleoprotein domain family, member 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         33           2
 C cysteine            0.9          5           1
 D aspartate           5.2         30           1
 E glutamate          11.5         67           3
 F phenylalanine       2.2         13           1
 G glycine             4.1         24           1
 H histidine           1.7         10           1
 I isoleucine          5.8         34           2
 K lysine             15.5         90           8
 L leucine             6.4         37           2
 M methionine          1.9         11           1
 N asparagine          3.4         20           2
 P proline             4.0         23           2
 Q glutamine           3.8         22           2
 R arginine            6.7         39           2
 S serine              7.7         45           3
 T threonine           5.3         31           2
 V valine              5.8         34           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   La ribonucleoprotein domain family, member 7 
LARP7                 1.000   La ribonucleoprotein domain family, member 7 
SSB                   0.053   autoantigen La 
LARP6                 0.049   La ribonucleoprotein domain family, member 6 isoform...
SFRS12                0.036   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.036   splicing factor, arginine/serine-rich 12 isoform b [...
EIF5B                 0.030   eukaryotic translation initiation factor 5B 
LARP1                 0.029   la related protein isoform 2 
LARP1                 0.029   la related protein isoform 1 
RBMX2                 0.029   RNA binding motif protein, X-linked 2 
LARP4                 0.028   c-Mpl binding protein isoform c 
LOC100133599          0.027   PREDICTED: hypothetical protein 
MKI67IP               0.027   MKI67 interacting nucleolar phosphoprotein 
RBM28                 0.026   RNA binding motif protein 28 
LARP4                 0.026   c-Mpl binding protein isoform b 
MAP1B                 0.026   microtubule-associated protein 1B 
LARP4                 0.026   c-Mpl binding protein isoform a 
RBM34                 0.026   RNA binding motif protein 34 isoform 1 
FAM133B               0.025   hypothetical protein LOC257415 isoform 2 
FAM133B               0.025   hypothetical protein LOC257415 isoform 1 
CIR1                  0.025   CBF1 interacting corepressor 
CYLC1                 0.025   cylicin, basic protein of sperm head cytoskeleton 1...
FAM133A               0.024   hypothetical protein LOC286499 
NEFH                  0.024   neurofilament, heavy polypeptide 200kDa 
TRDN                  0.024   triadin 
CHD7                  0.022   chromodomain helicase DNA binding protein 7 
MAP1A                 0.022   microtubule-associated protein 1A 
WDR87                 0.022   NYD-SP11 protein 
BOD1L                 0.022   biorientation of chromosomes in cell division 1-like...
PRPF38B               0.022   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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