Guide to the Human Genome
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Name: LARP4 Sequence: fasta or formatted (730aa) NCBI GI: 40353740
Description:

c-Mpl binding protein isoform b

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [653aa] c-Mpl binding protein isoform c
alt prot [724aa] c-Mpl binding protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         44           3
 C cysteine            1.6         12           1
 D aspartate           3.8         28           2
 E glutamate           8.4         61           2
 F phenylalanine       3.4         25           2
 G glycine             5.3         39           2
 H histidine           1.8         13           1
 I isoleucine          4.4         32           2
 K lysine              5.8         42           2
 L leucine             5.8         42           2
 M methionine          1.9         14           1
 N asparagine          5.6         41           3
 P proline             8.1         59           2
 Q glutamine           5.5         40           2
 R arginine            5.6         41           4
 S serine             10.5         77           3
 T threonine           6.8         50           2
 V valine              5.9         43           2
 W tryptophan          0.7          5           1
 Y tyrosine            3.0         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   c-Mpl binding protein isoform b 
LARP4                 0.987   c-Mpl binding protein isoform a 
LARP4                 0.519   c-Mpl binding protein isoform c 
LARP4B                0.272   La ribonucleoprotein domain family, member 4B 
LARP1                 0.034   la related protein isoform 2 
LARP1                 0.034   la related protein isoform 1 
LARP1B                0.030   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.030   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.030   La ribonucleoprotein domain family member 2 isoform ...
LARP7                 0.020   La ribonucleoprotein domain family, member 7 
LARP7                 0.020   La ribonucleoprotein domain family, member 7 
LOC644578             0.020   PREDICTED: similar to hCG2040199 
LOC644578             0.020   PREDICTED: similar to hCG2040199 
LOC644578             0.020   PREDICTED: similar to hCG2040199 
LARP6                 0.014   La ribonucleoprotein domain family, member 6 isoform...
AMPH                  0.014   amphiphysin isoform 2 
AMPH                  0.014   amphiphysin isoform 1 
RICS                  0.014   Rho GTPase-activating protein isoform 1 
RICS                  0.014   Rho GTPase-activating protein isoform 2 
SSB                   0.010   autoantigen La 
ZMYND8                0.010   zinc finger, MYND-type containing 8 isoform c 
ZMYND8                0.010   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.010   zinc finger, MYND-type containing 8 isoform b 
NIPBL                 0.008   delangin isoform B 
NIPBL                 0.008   delangin isoform A 
ASXL3                 0.008   additional sex combs like 3 
DVL2                  0.008   dishevelled 2 
SEC24B                0.008   SEC24 (S. cerevisiae) homolog B isoform a 
AFF2                  0.007   fragile X mental retardation 2 
SEC24B                0.007   SEC24 (S. cerevisiae) homolog B isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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