Guide to the Human Genome
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Name: DMKN Sequence: fasta or formatted (398aa) NCBI GI: 186928827
Description:

dermokine isoform 5 precursor

Referenced in:

Skin and Related Tissues

Other entries for this name:
alt prot [416aa] dermokine isoform 3 precursor
alt prot [386aa] dermokine isoform 4 precursor
alt prot [189aa] dermokine isoform 6
alt prot [137aa] dermokine isoform 7
alt prot [476aa] dermokine isoform 2 precursor
alt prot [90aa] dermokine isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         28           2
 C cysteine            1.0          4           1
 D aspartate           2.3          9           1
 E glutamate           4.5         18           2
 F phenylalanine       2.8         11           1
 G glycine            26.6        106           3
 H histidine           2.3          9           1
 I isoleucine          2.3          9           1
 K lysine              2.5         10           1
 L leucine             4.0         16           3
 M methionine          1.0          4           1
 N asparagine          7.0         28           3
 P proline             4.8         19           3
 Q glutamine           4.5         18           1
 R arginine            3.3         13           1
 S serine             15.3         61           3
 T threonine           3.3         13           1
 V valine              3.3         13           1
 W tryptophan          1.8          7           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dermokine isoform 5 precursor 
DMKN                  0.986   dermokine isoform 3 precursor 
DMKN                  0.959   dermokine isoform 4 precursor 
DMKN                  0.943   dermokine isoform 2 precursor 
DMKN                  0.158   dermokine isoform 6 
HRNR                  0.099   hornerin 
KRT9                  0.098   keratin 9 
LOR                   0.096   loricrin 
FLG2                  0.088   filaggrin family member 2 
KRT10                 0.084   keratin 10 
FUS                   0.082   fusion (involved in t(12;16) in malignant liposarcoma...
KRT1                  0.077   keratin 1 
COL3A1                0.077   collagen type III alpha 1 preproprotein 
KRT2                  0.076   keratin 2 
TAF15                 0.070   TBP-associated factor 15 isoform 2 
TAF15                 0.070   TBP-associated factor 15 isoform 1 
HNRNPA3               0.068   heterogeneous nuclear ribonucleoprotein A3 
COL1A1                0.068   alpha 1 type I collagen preproprotein 
COL5A3                0.068   collagen, type V, alpha 3 preproprotein 
IRS4                  0.066   insulin receptor substrate 4 
LOC100293055          0.065   PREDICTED: similar to COL22A1 protein 
COL22A1               0.065   collagen, type XXII, alpha 1 
ARID1B                0.065   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.065   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.065   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
COL6A6                0.062   collagen type VI alpha 6 
HNRNPA1               0.062   heterogeneous nuclear ribonucleoprotein A1 isoform b...
COL5A2                0.062   alpha 2 type V collagen preproprotein 
TRO                   0.062   trophinin isoform 5 
COL1A2                0.062   alpha 2 type I collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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