Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOR Sequence: fasta or formatted (312aa) NCBI GI: 109255251
Description:

loricrin

Referenced in:

Protein Composition and Structure
Late Cornified Envelope Family
Skin and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.0          3           1
 C cysteine            6.1         19           1
 D aspartate           0.3          1           1
 E glutamate           0.0          0           0
 F phenylalanine       2.9          9           2
 G glycine            46.5        145           8
 H histidine           0.3          1           1
 I isoleucine          1.6          5           2
 K lysine              2.2          7           2
 L leucine             0.0          0           0
 M methionine          0.3          1           1
 N asparagine          0.0          0           0
 P proline             2.9          9           2
 Q glutamine           4.5         14           2
 R arginine            0.0          0           0
 S serine             23.1         72           2
 T threonine           1.9          6           1
 V valine              3.5         11           1
 W tryptophan          0.3          1           1
 Y tyrosine            2.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   loricrin 
KRTAP5-4              0.174   keratin associated protein 5-4 
KRT9                  0.169   keratin 9 
KRT10                 0.167   keratin 10 
KRTAP5-1              0.154   keratin associated protein 5-1 
TAF15                 0.146   TBP-associated factor 15 isoform 2 
TAF15                 0.146   TBP-associated factor 15 isoform 1 
HNRNPA3               0.143   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA1               0.138   heterogeneous nuclear ribonucleoprotein A1 isoform b...
KRT1                  0.137   keratin 1 
HRNR                  0.137   hornerin 
KRT2                  0.126   keratin 2 
FAM98B                0.126   family with sequence similarity 98, member B isofor...
FLG2                  0.124   filaggrin family member 2 
TRO                   0.124   trophinin isoform 5 
DMKN                  0.123   dermokine isoform 3 precursor 
KRTAP5-5              0.118   keratin associated protein 5-5 
DMKN                  0.118   dermokine isoform 5 precursor 
DMKN                  0.117   dermokine isoform 4 precursor 
DMKN                  0.117   dermokine isoform 2 precursor 
ARID1B                0.114   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.114   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.114   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
HNRNPA0               0.112   heterogeneous nuclear ribonucleoprotein A0 
FUS                   0.111   fusion (involved in t(12;16) in malignant liposarcoma...
KRT3                  0.111   keratin 3 
IRS4                  0.101   insulin receptor substrate 4 
HNRNPA2B1             0.101   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.101   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
ILF3                  0.100   interleukin enhancer binding factor 3 isoform d [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press