Guide to the Human Genome
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Name: TEKT1 Sequence: fasta or formatted (418aa) NCBI GI: 16753231
Description:

tektin 1

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         33           1
 C cysteine            1.4          6           1
 D aspartate           7.2         30           2
 E glutamate          10.3         43           2
 F phenylalanine       1.4          6           1
 G glycine             2.2          9           2
 H histidine           2.6         11           1
 I isoleucine          6.0         25           2
 K lysine              8.6         36           2
 L leucine            12.0         50           2
 M methionine          1.9          8           1
 N asparagine          5.0         21           3
 P proline             2.6         11           3
 Q glutamine           5.5         23           1
 R arginine            7.2         30           2
 S serine              4.5         19           2
 T threonine           5.0         21           2
 V valine              6.0         25           2
 W tryptophan          1.0          4           1
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tektin 1 
TEKT3                 0.328   tektin 3 
TEKT4                 0.317   tektin 4 
TEKT5                 0.295   tektin 5 
MAFIP                 0.264   PREDICTED: MAFF interacting protein 
TEKT2                 0.234   tektin 2 
LOC727768             0.178   PREDICTED: similar to tektin 4 
LOC100132288          0.070   hypothetical protein LOC100132288 
MAFIP                 0.049   PREDICTED: MAFF interacting protein 
LOC652794             0.048   PREDICTED: similar to tektin 4 
MYH11                 0.038   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.038   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.038   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.038   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
TRAK1                 0.036   OGT(O-Glc-NAc transferase)-interacting protein 106 K...
FHAD1                 0.035   forkhead-associated (FHA) phosphopeptide binding do...
EEA1                  0.034   early endosome antigen 1, 162kD 
WDR87                 0.034   NYD-SP11 protein 
TRAK1                 0.034   OGT(O-Glc-NAc transferase)-interacting protein 106 ...
LUZP1                 0.033   leucine zipper protein 1 
LUZP1                 0.033   leucine zipper protein 1 
TPR                   0.033   nuclear pore complex-associated protein TPR 
CCDC88A               0.031   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.031   coiled-coil domain containing 88A isoform 1 
MYH9                  0.031   myosin, heavy polypeptide 9, non-muscle 
KIF20B                0.031   M-phase phosphoprotein 1 
CLIP1                 0.030   restin isoform b 
CLIP1                 0.030   restin isoform a 
GOLGB1                0.030   golgi autoantigen, golgin subfamily b, macrogolgin ...
CCDC147               0.030   coiled-coil domain containing 147 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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