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Search of human proteins with 154350224
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo
sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens] 381 e-106
gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo sapiens] 369 e-103
gi|30794246 hypothetical protein LOC90736 [Homo sapiens] 80 1e-15
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 47 9e-06
gi|155029552 hypothetical protein LOC388115 [Homo sapiens] 44 6e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 44 6e-05
gi|91208420 bassoon protein [Homo sapiens] 42 2e-04
gi|153792536 ATPase family, AAA domain containing 2B [Homo sapiens] 42 2e-04
gi|30795231 brain abundant, membrane attached signal protein 1 [... 41 7e-04
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 41 7e-04
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 41 7e-04
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 40 9e-04
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 40 9e-04
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|21539663 praja 1 isoform c [Homo sapiens] 40 0.002
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 40 0.002
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 40 0.002
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 39 0.003
gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo sapi... 39 0.003
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 39 0.003
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004
gi|4505419 nucleolar protein 3 [Homo sapiens] 38 0.004
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 38 0.004
gi|33286446 opioid growth factor receptor [Homo sapiens] 38 0.006
gi|33286416 Hermansky-Pudlak syndrome 1 protein isoform a [Homo ... 38 0.006
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 38 0.006
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 38 0.006
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.006
gi|156071474 solute carrier family 4, anion exchanger, member 2 ... 37 0.008
>gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens]
Length = 186
Score = 381 bits (979), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS
Sbjct: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
Query: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSS 120
FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSS
Sbjct: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSS 120
Query: 121 SSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALCQGLYFHINQTLREAHFHSLQH 180
SSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALCQGLYFHINQTLREAHFHSLQH
Sbjct: 121 SSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALCQGLYFHINQTLREAHFHSLQH 180
Query: 181 RGRPLT 186
RGRPLT
Sbjct: 181 RGRPLT 186
>gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo sapiens]
Length = 207
Score = 369 bits (947), Expect = e-103
Identities = 186/207 (89%), Positives = 186/207 (89%), Gaps = 21/207 (10%)
Query: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS
Sbjct: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
Query: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTE------------- 107
FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTE
Sbjct: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRL 120
Query: 108 --------SSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALC 159
SSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALC
Sbjct: 121 RGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALC 180
Query: 160 QGLYFHINQTLREAHFHSLQHRGRPLT 186
QGLYFHINQTLREAHFHSLQHRGRPLT
Sbjct: 181 QGLYFHINQTLREAHFHSLQHRGRPLT 207
>gi|30794246 hypothetical protein LOC90736 [Homo sapiens]
Length = 116
Score = 79.7 bits (195), Expect = 1e-15
Identities = 42/77 (54%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 74 RKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGP 133
RKRRRNG++E NH Q KR+ RNP+FQDS DTE S + SSS IN P+RASGP
Sbjct: 7 RKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVF---SWSDNERSSSRINIPERASGP 63
Query: 134 EGSLSQTMAGSSPNTPQ 150
EG+L+Q + N PQ
Sbjct: 64 EGNLNQIVTEPDANFPQ 80
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 47.0 bits (110), Expect = 9e-06
Identities = 43/126 (34%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 27 TRAAARAKARGGGRGGRRNTTPSVPSLRGAA-PRSFHPPAAMSERLRPRKRRRNGNEEDN 85
TR +R++++ R R+ + + P R + RS+ P S R RP RRR
Sbjct: 274 TRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMP 333
Query: 86 HLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINS-----PDRASGPEGSLSQT 140
PP R SR+PV + SS S SG SSSSSSS S P R S P +
Sbjct: 334 --PPPRHRRSRSPVRR---RRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRL 388
Query: 141 MAGSSP 146
+SP
Sbjct: 389 SPSASP 394
Score = 31.2 bits (69), Expect = 0.54
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 21 SPPAA---STRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRR 77
SPPA TR + + R R + +P S + + + S +PRK
Sbjct: 402 SPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVE 461
Query: 78 RNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGPEGSL 137
+ +EED K ++ + V Q + S S SSSSS P R+ G +
Sbjct: 462 LSESEEDKG----GKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEV 517
Query: 138 SQTMAGSSPNTPQPVPEQ 155
+ S + P P +
Sbjct: 518 GRRRRHSPSRSASPSPRK 535
Score = 30.4 bits (67), Expect = 0.92
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 11 SGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSER 70
+G G +SP +++ + + + RG RR + P+ R +P PP
Sbjct: 514 NGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTP 573
Query: 71 LRPRKR-------RRNGNEEDNHLPPQTKRSSRNP 98
P +R RR + PP +R S +P
Sbjct: 574 TPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSP 608
Score = 30.4 bits (67), Expect = 0.92
Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 8/131 (6%)
Query: 23 PAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNE 82
P+ S + R + + GRR +PS P R S PP P RRR +
Sbjct: 525 PSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSP 584
Query: 83 EDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMA 142
P +R S P Q + S S ++S P R + P + ++
Sbjct: 585 PPRRRSPSPRRYS--PPIQRRY------SPSPPPKRRTASPPPPPKRRASPSPPPKRRVS 636
Query: 143 GSSPNTPQPVP 153
S P + P
Sbjct: 637 HSPPPKQRSSP 647
Score = 29.6 bits (65), Expect = 1.6
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 43 RRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQD 102
+R +PS P R A PP + P KRR +H PP +RSS PV +
Sbjct: 601 QRRYSPSPPPKRRTASPP-PPPKRRASPSPPPKRR------VSHSPPPKQRSS--PVTKR 651
Query: 103 SWDTESSGSDSGGSSSSSSSSINSPD----RASGPEGSLSQTMAGSSP 146
+ SS G S S S+ SP + P QT + P
Sbjct: 652 RSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPP 699
>gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
Length = 534
Score = 44.3 bits (103), Expect = 6e-05
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 23/144 (15%)
Query: 19 GYSPPAASTRAAARAKAR---------GGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSE 69
G P A +R R+ + G GRGG+ + PSV G+ R E
Sbjct: 281 GEGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASR-PSVAPATGSKARG-------KE 332
Query: 70 RLRPRKRRRNGNEEDNHLPPQT-KRSSRNPVFQDSWDTESSGSDSG--GSSSSSSSSINS 126
RL R RR + E+ L Q +S+R ++ + SG + G GS+ ++S ++ S
Sbjct: 333 RLTGRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALAS 392
Query: 127 PDRASGPEGSLSQTMAGSSPNTPQ 150
P+ GP+G + A S P +PQ
Sbjct: 393 PE---GPKGESVASTASSVPCSPQ 413
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 44.3 bits (103), Expect = 6e-05
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 21/147 (14%)
Query: 8 AGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAM 67
+ SS + + S ++S+ +++ + G P V R +P PA
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPT----PA-- 2585
Query: 68 SERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSP 127
P++ R G + P KR R+ + SS S S SSSSSSSS +S
Sbjct: 2586 -----PKEAVREGRPPE---PTPAKRKRRS-------SSSSSSSSSSSSSSSSSSSSSSS 2630
Query: 128 DRASGPEGSLSQTMAGSSPNTPQPVPE 154
+S S S + + SSP+ +P P+
Sbjct: 2631 SSSSSSSSSSSSSSSSSSPSPAKPGPQ 2657
Score = 35.0 bits (79), Expect = 0.037
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 33/146 (22%)
Query: 21 SPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSER-------LRP 73
+P A S ++ A A G N SVP+ PPA+ + L+P
Sbjct: 2467 TPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQP 2526
Query: 74 RKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGP 133
K RR+ + + SS S S SSSSSSSS +S +S
Sbjct: 2527 AKERRSSSS-----------------------SSSSSSSSSSSSSSSSSSSSSGSSSSDS 2563
Query: 134 EGS---LSQTMAGSSPNTPQPVPEQS 156
EGS + +A +P P P+++
Sbjct: 2564 EGSSLPVQPEVALKRVPSPTPAPKEA 2589
Score = 34.7 bits (78), Expect = 0.049
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 26/149 (17%)
Query: 21 SPPAASTRAAARAKARGGGRGGRRNTTPS--------VPSLRGAAPRSFHPPAAMSERLR 72
SP S R+ +R AR RG R+ TP+ P+ R RS P R R
Sbjct: 639 SPARRSGRSRSRTPAR---RGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSR 695
Query: 73 PRKRRRNGNEE-------DNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGS--------S 117
+R R+ + + P + RS + ++ T S S S S
Sbjct: 696 TPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRIS 755
Query: 118 SSSSSSINSPDRASGPEGSLSQTMAGSSP 146
S S S++SP + SL ++++GSSP
Sbjct: 756 SRRSRSLSSPRSKAKSRLSLRRSLSGSSP 784
Score = 34.3 bits (77), Expect = 0.064
Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 3/131 (2%)
Query: 4 RGADAGSSGGTGPT-EGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFH 62
R SS G GP+ EG S +S K+R RG R + P S RS
Sbjct: 1635 RSRSGSSSKGRGPSPEGSSSTESSPEHPP--KSRTARRGSRSSPEPKTKSRTPPRRRSSR 1692
Query: 63 PPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSS 122
++ + R +R R+ + R R+P E S S S+SS
Sbjct: 1693 SSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPR 1752
Query: 123 SINSPDRASGP 133
+ + R P
Sbjct: 1753 TKTTSRRGRSP 1763
Score = 33.5 bits (75), Expect = 0.11
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 21 SPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNG 80
SP +R ++R R R+ S SLR + S P S+ P +R R+G
Sbjct: 746 SPEMKKSRISSR---RSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQT--PPRRSRSG 800
Query: 81 NEED---NHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGPEGSL 137
+ + + PP+ RSS +P + T S S S S S +P R +GS+
Sbjct: 801 SSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKS-GTPPR----QGSI 855
Query: 138 SQTMAGSSPNTPQ 150
+ A TPQ
Sbjct: 856 TSPQANEQSVTPQ 868
Score = 32.7 bits (73), Expect = 0.18
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 8/126 (6%)
Query: 25 ASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEED 84
A TR R ++R G ++P V S +PR ++ + +PR R + D
Sbjct: 1567 AKTRTPLRQRSRSG-------SSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSD 1619
Query: 85 NHLPPQTKRSSRNPVFQDSWDTESS-GSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAG 143
+ P+ P S + G GSSS+ SS + P + GS S
Sbjct: 1620 SSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPK 1679
Query: 144 SSPNTP 149
+ TP
Sbjct: 1680 TKSRTP 1685
Score = 30.8 bits (68), Expect = 0.70
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 3 GRGADAGSSGGTGPTEGYSPPAASTRAAARA-KARGGGRGGRRNTTPSV-PSLRGAAPRS 60
G G S GT T+ S P +T+ + + + + + T PS P P
Sbjct: 304 GEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPE- 362
Query: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSS 120
PPA P R+G + NP + S + S S S
Sbjct: 363 --PPAPT-----PLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQS 415
Query: 121 SSSINSPDRASGPEGSLSQTMAGSSPNTPQPVP 153
SSS +SP P+ + A SSP +P+P P
Sbjct: 416 SSSESSPP---SPQPTKVSRHASSSPESPKPAP 445
Score = 27.7 bits (60), Expect = 5.9
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 116 SSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSAL 158
SSSSSSSS +S +S S S + + S + PV + AL
Sbjct: 2534 SSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVAL 2576
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 42.4 bits (98), Expect = 2e-04
Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 2 GGRGADAGSSGGTGPTEGYSP-PAASTRAAARAKARGGGR----GGRRNTT-PSVPSLRG 55
GG G GG GP G P P A +A A GGG+ G R+T P VP G
Sbjct: 9 GGAGDGPLPPGGAGPGPGPGPGPGAGKPPSAPA---GGGQLPAAGAARSTAVPPVPG-PG 64
Query: 56 AAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSG-SDSG 114
P P + S RL P++ N P + S+ P + +T + G +
Sbjct: 65 PGPGPGPGPGSTSRRLDPKEPLGNQRAAS---PTPKQASATTPGHESPRETRAQGPAGQE 121
Query: 115 GSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSAL 158
+ ++S + SG S+S GS+P +P VP+ + L
Sbjct: 122 ADGPRRTLQVDSRTQRSGRSPSVSPD-RGSTPTSPYSVPQIAPL 164
>gi|153792536 ATPase family, AAA domain containing 2B [Homo sapiens]
Length = 1458
Score = 42.4 bits (98), Expect = 2e-04
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 25/135 (18%)
Query: 3 GRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFH 62
G GA+ G++GG+ ++ TRAA+ A+ GG GG T
Sbjct: 24 GAGAEPGATGGSSHFISSRTRSSKTRAASCPAAKAGGSGGAGVTLDEA------------ 71
Query: 63 PPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNP--VFQDSWDTESSGSDSGGSSSSS 120
RK +G+ D+H+ P KR+ + P V +D + S+G + S+
Sbjct: 72 -----------RKVEVDGSLSDSHVSPPAKRTLKQPDSVCKDKSKSRSTGQREEWNLSTG 120
Query: 121 SSSINSPDRASGPEG 135
+ + S A+ P G
Sbjct: 121 QARLTSQPGATLPNG 135
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 40.8 bits (94), Expect = 7e-04
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 5/132 (3%)
Query: 27 TRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNH 86
T AA AKA + P P+ G AP++ AA +E P EE
Sbjct: 90 TEGAAEAKAEPPKAPEQEQAAPG-PAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGE- 147
Query: 87 LPPQTKRSSRNPVFQDSWDTESSGSDSG-GSSSSSSSSINSPDRASGPEGSLSQTMAGSS 145
P+ + P Q++ + SDS GSS ++ SS +P P + +S
Sbjct: 148 --PKKTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAAS 205
Query: 146 PNTPQPVPEQSA 157
P+PV +A
Sbjct: 206 AEEPKPVEAPAA 217
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 40.8 bits (94), Expect = 7e-04
Identities = 50/180 (27%), Positives = 72/180 (40%), Gaps = 26/180 (14%)
Query: 5 GADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGR-------GGRRNTTPSVPSLRGAA 57
GA AG GG + PA + ARGGGR G RR T + RG A
Sbjct: 77 GAAAGEEGGARLQATRTWPAGILEGGPQVAARGGGRGWEGGGLGARRAVT---AARRGGA 133
Query: 58 PRSF-HPPAAMSERLRPRKRRRNGNEEDNHLP---------PQTKRSSRNPVFQDSWDTE 107
R P + R RP++ + G ++ T +SRNP + + + +
Sbjct: 134 SRPLAGEPWREAARRRPQQCPQWGRARESRSAALASPRVSNAPTTPASRNPGLR-AQERQ 192
Query: 108 SSGSDSGGSSSSSSSSINSPDRASG-PEGSLSQTMAGSSPNT----PQPVPEQSALCQGL 162
S +GG + + P R +G G+ S+ AG+ P T P P P +A GL
Sbjct: 193 SGRRAAGGGGARAEPPRVPPCRPAGCSGGNRSRRAAGAGPRTTRRKPPPRPPGTAPAAGL 252
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 40.8 bits (94), Expect = 7e-04
Identities = 58/195 (29%), Positives = 77/195 (39%), Gaps = 42/195 (21%)
Query: 5 GADAGSSGGTGPTEGYSP---PAASTRAAARAKARGGGRGGRRNTTP----SVPSLRGAA 57
G+ AG+ G GPTEG++ P +S + G TP VPS
Sbjct: 1072 GSVAGA--GPGPTEGFTEKNVPESSPHSPCE------GLPSEAALTPRPEGKVPSRLALG 1123
Query: 58 PRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSS----RNPVF-----------QD 102
R + RP+K+ D+ P T SS R P+ QD
Sbjct: 1124 SRGGYNGRGWGSPGRPKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAPTSWGRGQD 1183
Query: 103 SWDTESSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTM-----AGSSPNTPQP-VPEQ- 155
S SS SDS GSSSSS S RAS G+ ++T+ G P + P VP Q
Sbjct: 1184 SDSISSSSSDSLGSSSSSGSR-----RASASGGARAKTVEVGRYKGRRPESHAPHVPNQP 1238
Query: 156 SALCQGLYFHINQTL 170
S YF + +T+
Sbjct: 1239 SEAAAHFYFELAKTV 1253
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 40.4 bits (93), Expect = 9e-04
Identities = 45/163 (27%), Positives = 61/163 (37%), Gaps = 15/163 (9%)
Query: 5 GADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPP 64
GA AG GG + PA + ARGGGRG G R
Sbjct: 29 GAAAGEEGGARLQATRTWPAGILEGGPQVAARGGGRGWEGG---------GLGARRAVTA 79
Query: 65 AAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSI 124
A E R R+ R T +SRNP + + + +S +GG + +
Sbjct: 80 ARRGEWGRARESRSAALASPRVSNAPTTPASRNPGLR-AQERQSGRRAAGGGGARAEPPR 138
Query: 125 NSPDRASG-PEGSLSQTMAGSSPNT----PQPVPEQSALCQGL 162
P R +G G+ S+ AG+ P T P P P +A GL
Sbjct: 139 VPPCRPAGCSGGNRSRRAAGAGPRTTRRKPPPRPPGTAPAAGL 181
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 40.4 bits (93), Expect = 9e-04
Identities = 40/125 (32%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 18 EGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRR 77
EG + P + A G GG + S+ SL S+ P A SE P +
Sbjct: 2467 EGVTSPKSKKAKEALLLREDPGAGGWQEPK-SLLSLG-----SYPPAAGSSEPKAPWPKA 2520
Query: 78 RNGNEEDNHLPPQTKRSSRNPVFQD--------SWDTESSGSDSGGSSSSSSSSINSPDR 129
+G+ P T S NP D + ++ESS S S GSSSSSSSS +S
Sbjct: 2521 TDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSE 2580
Query: 130 ASGPE 134
G E
Sbjct: 2581 TEGEE 2585
Score = 40.4 bits (93), Expect = 9e-04
Identities = 36/148 (24%), Positives = 53/148 (35%), Gaps = 18/148 (12%)
Query: 6 ADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPA 65
+ + SSG + + S + T G G G S S R A+P S +
Sbjct: 2560 SSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSS 2619
Query: 66 AMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSIN 125
+ S + SS + S + SS S S SSSSSSSS +
Sbjct: 2620 SSSSS------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2661
Query: 126 SPDRASGPEGSLSQTMAGSSPNTPQPVP 153
S +S + + + SS + P P
Sbjct: 2662 SSSSSSSSSSTTDEDSSCSSDDEAAPAP 2689
Score = 30.8 bits (68), Expect = 0.70
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 4 RGADAGSSGGTGP-------TEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGA 56
+G +AG G P +E +P A+S AA R+KA+ G+ ++ +G
Sbjct: 2052 KGKEAGPGAGLPPPRAPALPSEARAPHASSLTAAKRSKAKAKGKEVKKENRG-----KGG 2106
Query: 57 APRSFHPPAAMSERLRPRKRRRNGNEEDNHLP 88
A A E P + + ED HLP
Sbjct: 2107 AVSKLMESMAAEEDFEP--NQDSSFSEDEHLP 2136
Score = 27.3 bits (59), Expect = 7.8
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 18 EGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPR--- 74
E P A A A + + G+ + P + AP+ PP ++ L+P+
Sbjct: 2684 EAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPPQPTQPLQPKAQA 2743
Query: 75 -KRRRNGNEEDNHLPPQTKRSSR 96
+ R E HLP + + R
Sbjct: 2744 GAKSRPKKREGVHLPTTKELAKR 2766
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 40.0 bits (92), Expect = 0.001
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 30/140 (21%)
Query: 21 SPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNG 80
SP AA+ AAA A + G + P+ P+ R A S P+ S R +P
Sbjct: 185 SPAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKAS---PSPSSARTQP------- 234
Query: 81 NEEDNHLPPQTKRSSRNPVFQDSWDTESSG---SDSGGSSSSSSS----SINSPDRASG- 132
PP R+ R DS G S+SG SSSS S + P RAS
Sbjct: 235 -------PPAGSRTGRKSHSLDSLSRRREGALSSESGASSSSYSGESLRELRWPPRASAR 287
Query: 133 ---PEGSLSQTMAGSSPNTP 149
P GS S T ++P P
Sbjct: 288 NSCPAGSASSTT--NAPGRP 305
>gi|21539663 praja 1 isoform c [Homo sapiens]
Length = 455
Score = 39.7 bits (91), Expect = 0.002
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 60 SFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNP--VFQDSW-DTESSGSDSGGS 116
SF PP + ER+ +++ + P QT + SR+P + SW D+ESSG++
Sbjct: 33 SFRPPTSQRERIASQRKTNSEVPMHRSAPSQTTKRSRSPFSTTRRSWDDSESSGTNLNID 92
Query: 117 SSSSSSSINSPDRASGPEG---SLSQTMAG-SSPNTPQP 151
+ SS+ D A+ EG L++ G SS P+P
Sbjct: 93 NEDYSSTSRWRDTANDNEGHSDGLARRGRGESSSGYPEP 131
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 39.7 bits (91), Expect = 0.002
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 2 GGRGADAGSSGGTGPTEGYSP-PAASTRAAARAKARGG---GRGGR-RNTTPSVPSLRGA 56
G R +G++ + P +P P AS+ KARGG +GGR R V S + +
Sbjct: 74 GVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRS 133
Query: 57 APRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGS 116
RS +R + ++ + N + ++K+ +R S + SS S S S
Sbjct: 134 RSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSS 193
Query: 117 SSSSSSSINSPDRASG 132
SSSSSSS + + G
Sbjct: 194 SSSSSSSSSDGRKKRG 209
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 39.7 bits (91), Expect = 0.002
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 2 GGRGADAGSSGGTGPTEGYSP-PAASTRAAARAKARGG---GRGGR-RNTTPSVPSLRGA 56
G R +G++ + P +P P AS+ KARGG +GGR R V S + +
Sbjct: 74 GVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRS 133
Query: 57 APRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGS 116
RS +R + ++ + N + ++K+ +R S + SS S S S
Sbjct: 134 RSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSS 193
Query: 117 SSSSSSSINSPDRASG 132
SSSSSSS + + G
Sbjct: 194 SSSSSSSSSDGRKKRG 209
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 38.9 bits (89), Expect = 0.003
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 81 NEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGPE 134
N E +H + +SR+ S SSGSDS SSSS S N P +++ PE
Sbjct: 410 NSEPSHHNSEGADNSRDDSSSHSGSESSSGSDSESESSSSDSEANEPSQSASPE 463
Score = 34.3 bits (77), Expect = 0.064
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 49 SVPSLRGAAPRSFHPPAAMSERLRPR--KRRRNGNEEDNHLPP--------QTKRSSRNP 98
S+P L A P+ PP+A E+ P ++R G+ + + P Q+++ S
Sbjct: 70 SIPKLV-AIPKPTVPPSA-DEKSNPNFFEQRHGGSHQSSKWTPVGPAPSTSQSQKRSSGL 127
Query: 99 VFQDSWDTESSGSDSGGSSSS------SSSSINSPDRASGPEGSLSQTMAGSSPNTPQPV 152
S S+GS SG +SS S ++ S R G GS SSP PQ V
Sbjct: 128 QSGHSSQRTSAGSSSGTNSSGQRHDRESYNNSGSSSRKKGQHGSEHSKSRSSSPGKPQAV 187
Score = 33.1 bits (74), Expect = 0.14
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 84 DNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAG 143
D +P T S+ P +S ++S DS S S SSS + + S S + +
Sbjct: 399 DKTMPRSTPGSNSEPSHHNSEGADNSRDDSSSHSGSESSSGSDSESESSSSDSEANEPSQ 458
Query: 144 SSPNTPQPVP 153
S+ P+P P
Sbjct: 459 SASPEPEPPP 468
Score = 27.3 bits (59), Expect = 7.8
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 89 PQTKRSSRNPVFQDSWDTESSGSDSGGSSSSS--SSSINSPDRASGPEGSLSQTMA---- 142
P+T+ SR S +SS + + +S SS SSS + + G S S+ +
Sbjct: 824 PKTEHGSRKRTISQSSSLKSSSNSNKETSGSSKNSSSTSKQKKTEGKTSSSSKEVKEKAP 883
Query: 143 GSSPNTPQPVP 153
SS N P P
Sbjct: 884 SSSSNCPPSAP 894
>gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo
sapiens]
Length = 946
Score = 38.5 bits (88), Expect = 0.003
Identities = 33/124 (26%), Positives = 43/124 (34%), Gaps = 17/124 (13%)
Query: 30 AARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPP 89
+A GGG G + TP P +P S P + L PP
Sbjct: 16 SANEMKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFL---------------FPP 60
Query: 90 QTKRSSRNPVFQDSWDT--ESSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPN 147
S P W + S SG S SS SS++SP A G Q +A + +
Sbjct: 61 AESLSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLS 120
Query: 148 TPQP 151
P P
Sbjct: 121 PPGP 124
>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
sapiens]
Length = 999
Score = 38.5 bits (88), Expect = 0.003
Identities = 53/190 (27%), Positives = 63/190 (33%), Gaps = 40/190 (21%)
Query: 2 GGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGR------------RNTTPS 49
GG G G T T SPP A ARG G G R R + S
Sbjct: 38 GGGGRAGGPERRTADTPSPSPPPPV--GTGNAPARGSGAGSRWSGFKKRKQVLDRVFSSS 95
Query: 50 VPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESS 109
P+L ++P P A RRR HL P K +
Sbjct: 96 QPNLCCSSPEPLEPGGAGRAEQGSTLRRR----IREHLLPAVKGPAAASGAAGGTPPGGR 151
Query: 110 GSDSGGSSSSSSSSINSP-------DRA-------SGPEGSLSQTMAGSSPNT------- 148
DS SSSS+SSS++S DRA GP L + S P T
Sbjct: 152 SPDSAPSSSSASSSLSSSPQPPPRGDRARDEGARRQGPGAHLCHQKSSSLPGTACLEQLL 211
Query: 149 -PQPVPEQSA 157
P P P + A
Sbjct: 212 EPPPPPAEPA 221
Score = 27.7 bits (60), Expect = 5.9
Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 27/123 (21%)
Query: 23 PAASTRAAARAKARGGGRGGRR-NTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNG- 80
PA AAA A G GGR ++ PS S + S PP +R R RR G
Sbjct: 131 PAVKGPAAASGAAGGTPPGGRSPDSAPSSSSASSSLSSSPQPPPR-GDRARDEGARRQGP 189
Query: 81 -----NEEDNHL------------PPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSS 123
+++ + L PP +R+P ES ++G SS
Sbjct: 190 GAHLCHQKSSSLPGTACLEQLLEPPPPPAEPARSP-------AESRAPETGEEHGSSQKI 242
Query: 124 INS 126
IN+
Sbjct: 243 INT 245
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 38.1 bits (87), Expect = 0.004
Identities = 45/142 (31%), Positives = 57/142 (40%), Gaps = 32/142 (22%)
Query: 21 SPPAASTRAAARAKARGGGRGGRRNTT--PSVPSLRGAAPRSFHPPAAMSERLRPRKRRR 78
SP AA+ AAA A A G ++ P+ P+ R A S P+ S R +P
Sbjct: 185 SPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKAS---PSPSSARTQP----- 236
Query: 79 NGNEEDNHLPPQTKRSSRNPVFQDSWDTESSG---SDSGGSSSSSSS----SINSPDRAS 131
PP R+ R DS G S+SG SSSS S + P RAS
Sbjct: 237 ---------PPAGSRTGRKSHSLDSLSRRREGALSSESGASSSSYSGESLRELRWPPRAS 287
Query: 132 G----PEGSLSQTMAGSSPNTP 149
P GS S T ++P P
Sbjct: 288 ARNSCPAGSASSTT--NAPGRP 307
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 38.1 bits (87), Expect = 0.004
Identities = 45/142 (31%), Positives = 57/142 (40%), Gaps = 32/142 (22%)
Query: 21 SPPAASTRAAARAKARGGGRGGRRNTT--PSVPSLRGAAPRSFHPPAAMSERLRPRKRRR 78
SP AA+ AAA A A G ++ P+ P+ R A S P+ S R +P
Sbjct: 185 SPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKAS---PSPSSARTQP----- 236
Query: 79 NGNEEDNHLPPQTKRSSRNPVFQDSWDTESSG---SDSGGSSSSSSS----SINSPDRAS 131
PP R+ R DS G S+SG SSSS S + P RAS
Sbjct: 237 ---------PPAGSRTGRKSHSLDSLSRRREGALSSESGASSSSYSGESLRELRWPPRAS 287
Query: 132 G----PEGSLSQTMAGSSPNTP 149
P GS S T ++P P
Sbjct: 288 ARNSCPAGSASSTT--NAPGRP 307
>gi|4505419 nucleolar protein 3 [Homo sapiens]
Length = 208
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 65 AAMSERLRPRKRRRNGNE---EDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSS 121
AA E LR +R + + H+ P + S +P W E+ GS G++
Sbjct: 71 AACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS---GTTCPGL 127
Query: 122 SSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSA 157
+ PD A GPEG S+ + +P P+P E A
Sbjct: 128 PRASDPDEAGGPEG--SEAVQSGTPEEPEPELEAEA 161
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 62 HPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSS 121
HP + + R R R R N+ RSS + S + SSGS S SSSS
Sbjct: 549 HPESKSKTKTRSRSRGRARNKTSK----SRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSR 604
Query: 122 SSINSPDRASGPEGSLSQTMAGSS 145
SS +S SG S + SS
Sbjct: 605 SSSSSSSSTSGSSSRDSSSSTSSS 628
Score = 35.8 bits (81), Expect = 0.022
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 70 RLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDR 129
R R R R RN + + SS + S + SSGS S SSSSSSSS +
Sbjct: 559 RSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTS---- 614
Query: 130 ASGPEGSLSQTMAGS 144
S S S T + S
Sbjct: 615 GSSSRDSSSSTSSSS 629
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 37.7 bits (86), Expect = 0.006
Identities = 43/183 (23%), Positives = 59/183 (32%), Gaps = 7/183 (3%)
Query: 5 GADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPS-VPSLRGAAPRSFHP 63
G + + G TGP EG + T + A G G +PS P R A P P
Sbjct: 499 GVEEDTEGRTGPKEGTPGSPSETPGPSPA----GPAGDEPAESPSETPGPRPAGPAGDEP 554
Query: 64 PAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSS 123
+ SE PR G+E S P + ++ S + +
Sbjct: 555 AESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEP 614
Query: 124 INSPDRASGPE--GSLSQTMAGSSPNTPQPVPEQSALCQGLYFHINQTLREAHFHSLQHR 181
SP GP G A S TP P P + L++A S
Sbjct: 615 AESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEAAELQDAEVESSAKS 674
Query: 182 GRP 184
G+P
Sbjct: 675 GKP 677
>gi|33286416 Hermansky-Pudlak syndrome 1 protein isoform a [Homo
sapiens]
Length = 700
Score = 37.7 bits (86), Expect = 0.006
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 82 EEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTM 141
E+D P+ RSS+N Q +W S+G G S+ + + S + P+ P S
Sbjct: 252 EDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQS 311
Query: 142 AGSSPNTPQPVPEQSAL 158
+GS+ P AL
Sbjct: 312 SGSTIWLEGGTPPMDAL 328
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 37.7 bits (86), Expect = 0.006
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 20/125 (16%)
Query: 32 RAKARGGGRGGRRNTTPSVPSLR----GAAPRSFHPPAAMSERLRPRKRRRNGNEED--- 84
R+++R GR GRR + S R G R R R + RR+ +EE+
Sbjct: 6 RSRSRSAGRRGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRRRRRSRERRSDSEEERWQ 65
Query: 85 -----NHLPPQTKRSSRNPVFQ-DSWDTESSGS-------DSGGSSSSSSSSINSPDRAS 131
+ PP+ K SR+ Q DS + +S G S SSS+SS SP R+
Sbjct: 66 RSGMRSRSPPRPKWHSRDGSSQSDSGEEQSRGQWARRRRRARSWSPSSSASSSASPGRSQ 125
Query: 132 GPEGS 136
P +
Sbjct: 126 SPRAA 130
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 37.7 bits (86), Expect = 0.006
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 20/125 (16%)
Query: 32 RAKARGGGRGGRRNTTPSVPSLR----GAAPRSFHPPAAMSERLRPRKRRRNGNEED--- 84
R+++R GR GRR + S R G R R R + RR+ +EE+
Sbjct: 6 RSRSRSAGRRGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRRRRRSRERRSDSEEERWQ 65
Query: 85 -----NHLPPQTKRSSRNPVFQ-DSWDTESSGS-------DSGGSSSSSSSSINSPDRAS 131
+ PP+ K SR+ Q DS + +S G S SSS+SS SP R+
Sbjct: 66 RSGMRSRSPPRPKWHSRDGSSQSDSGEEQSRGQWARRRRRARSWSPSSSASSSASPGRSQ 125
Query: 132 GPEGS 136
P +
Sbjct: 126 SPRAA 130
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.7 bits (86), Expect = 0.006
Identities = 45/185 (24%), Positives = 67/185 (36%), Gaps = 39/185 (21%)
Query: 2 GGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRG------GRRNTTP-SVPSLR 54
GG G +G+ GG P +SPP + + R + + G+ + +P S PS +
Sbjct: 315 GGSGQRSGAHGGR-PGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQ 373
Query: 55 GAAPRSFHPPAAMSERLRPRKR--------RRNGNEEDNHLPPQ--TKRSSRNPVFQDSW 104
G R+ R R R+R RR G PP+ ++ SR DS
Sbjct: 374 GRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSG 433
Query: 105 DTESS-------GSDSGGSS--------------SSSSSSINSPDRASGPEGSLSQTMAG 143
+ GS+ G +S+S S + R GPEG S G
Sbjct: 434 SGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPG 493
Query: 144 SSPNT 148
P +
Sbjct: 494 PHPRS 498
Score = 32.7 bits (73), Expect = 0.18
Identities = 32/131 (24%), Positives = 47/131 (35%), Gaps = 16/131 (12%)
Query: 42 GRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQ 101
GRR+ S S + S + + RL P+ R +E Q SR+P
Sbjct: 249 GRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHR-----DEGRKTGSQRSSGSRSPSPS 303
Query: 102 --DSWDTES----SGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTP-----Q 150
W + SG SG S+ + PD+ S P + A ++P P
Sbjct: 304 GGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKES 363
Query: 151 PVPEQSALCQG 161
P P + QG
Sbjct: 364 PSPRSAPSSQG 374
Score = 29.3 bits (64), Expect = 2.0
Identities = 39/172 (22%), Positives = 58/172 (33%), Gaps = 35/172 (20%)
Query: 7 DAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAA 66
D G G+ + G P+ S + + R GG G R G P S H P
Sbjct: 284 DEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGA-------HGGRPGSAHSPPD 336
Query: 67 MSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSS-------- 118
PR R ++ P R +P + + ++ G + G +
Sbjct: 337 KPSSPSPRVR----DKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRR 392
Query: 119 --SSSSSINSP-------DRASGPEGS-------LSQTMAGSSPNTPQPVPE 154
S SS ++P R + P GS S + +GS P P PE
Sbjct: 393 RRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPE 444
>gi|156071474 solute carrier family 4, anion exchanger, member 2
(erythrocyte membrane protein band 3-like 1) [Homo
sapiens]
Length = 1241
Score = 37.4 bits (85), Expect = 0.008
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 33 AKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLP---P 89
A +RGG GR R ++ HP +S L P RRR + P P
Sbjct: 54 AGSRGGEEPGRSYGEEDFEYHRQSSHHIHHP---LSTHLPPDARRRKTPQGPGRKPRRRP 110
Query: 90 QTKRSSRNPVFQDSWDTESSGSDSGGSSS-SSSSSINSPDRAS---GPEGSLSQTMAGSS 145
+ P ++ + E S++ G+ + + S +++P + S + +S
Sbjct: 111 GASPTGETPTIEEGEEDEDEASEAEGARALTQPSPVSTPSSVQFFLQEDDSADRKAERTS 170
Query: 146 PNTPQPVPEQSA 157
P++P P+P Q A
Sbjct: 171 PSSPAPLPHQEA 182
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.125 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,507,105
Number of Sequences: 37866
Number of extensions: 535564
Number of successful extensions: 7870
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 617
Number of HSP's that attempted gapping in prelim test: 5185
Number of HSP's gapped (non-prelim): 2230
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.