HPS1 26071

Name: HPS1	Sequence: fasta or formatted (700aa)		NCBI GI: 33286416
Description: Hermansky-Pudlak syndrome 1 protein isoform a		Referenced in: Lysosomes and Related Organelles
Other entries for this name: alt prot [324aa] Hermansky-Pudlak syndrome 1 protein isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.0 42 2 C cysteine 2.0 14 1 D aspartate 4.3 30 2 E glutamate 7.7 54 4 F phenylalanine 4.1 29 1 G glycine 5.6 39 2 H histidine 2.4 17 1 I isoleucine 3.4 24 2 K lysine 4.1 29 2 L leucine 14.9 104 2 M methionine 2.0 14 1 N asparagine 2.0 14 1 P proline 6.1 43 2 Q glutamine 5.6 39 2 R arginine 5.6 39 2 S serine 8.4 59 2 T threonine 5.1 36 2 V valine 5.4 38 1 W tryptophan 1.7 12 1 Y tyrosine 3.4 24 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Hermansky-Pudlak syndrome 1 protein isoform a HPS1 0.436 Hermansky-Pudlak syndrome 1 protein isoform c LOC729966 0.010 PREDICTED: similar to hCG2001482 FAM104A 0.009 hypothetical protein LOC84923 isoform 2 SETD1B 0.008 SET domain containing 1B ITPKC 0.007 inositol 1,4,5-trisphosphate 3-kinase C ICAM1 0.006 intercellular adhesion molecule 1 precursor IGSF9B 0.006 immunoglobulin superfamily, member 9B DIDO1 0.006 death inducer-obliterator 1 isoform c NRG2 0.006 neuregulin 2 isoform 2 NRG2 0.006 neuregulin 2 isoform 4 NRG2 0.006 neuregulin 2 isoform 3 NRG2 0.006 neuregulin 2 isoform 1 GLTSCR1 0.006 glioma tumor suppressor candidate region gene 1 [Ho... LCP2 0.005 lymphocyte cytosolic protein 2 GLIS3 0.005 GLIS family zinc finger 3 isoform a MAPK7 0.005 mitogen-activated protein kinase 7 isoform 1 MAPK7 0.005 mitogen-activated protein kinase 7 isoform 1 MAPK7 0.005 mitogen-activated protein kinase 7 isoform 1 MAPK7 0.005 mitogen-activated protein kinase 7 isoform 2 HEYL 0.005 hairy/enhancer-of-split related with YRPW motif-like ... GLIS3 0.005 GLIS family zinc finger 3 isoform b TRIM28 0.005 tripartite motif-containing 28 protein MYO7B 0.005 myosin VIIB PPP1R12C 0.005 protein phosphatase 1, regulatory subunit 12C MAP3K6 0.004 mitogen-activated protein kinase kinase kinase 6 [Ho... EP400 0.004 E1A binding protein p400 ACD 0.004 adrenocortical dysplasia homolog isoform 3 ACD 0.004 adrenocortical dysplasia homolog isoform 1 ACD 0.004 adrenocortical dysplasia homolog isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.