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Search of human proteins with 14211923
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14211923 PKCI-1-related HIT protein [Homo sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14211923 PKCI-1-related HIT protein [Homo sapiens] 323 5e-89
gi|4885413 histidine triad nucleotide binding protein 1 [Homo sa... 164 3e-41
gi|189217863 histidine triad nucleotide binding protein 3 [Homo ... 47 6e-06
gi|28329436 aprataxin isoform a [Homo sapiens] 46 2e-05
gi|28329433 aprataxin isoform c [Homo sapiens] 46 2e-05
gi|28329430 aprataxin isoform b [Homo sapiens] 46 2e-05
gi|28329427 aprataxin isoform d [Homo sapiens] 42 2e-04
gi|8923156 aprataxin isoform d [Homo sapiens] 42 2e-04
gi|4503719 fragile histidine triad gene [Homo sapiens] 34 0.049
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 30 0.92
gi|110349719 titin isoform N2-A [Homo sapiens] 30 1.2
gi|239752671 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|239747188 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|239741014 PREDICTED: hypothetical protein XP_002342054 [Homo ... 30 1.2
gi|110815813 ankyrin repeat and FYVE domain containing 1 isoform... 30 1.2
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 29 2.1
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 29 2.1
gi|22212931 nucleolar protein family 6 gamma isoform [Homo sapiens] 29 2.1
gi|18644728 nucleolar protein family 6 alpha isoform [Homo sapiens] 29 2.1
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 28 3.5
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 28 3.5
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ... 28 4.6
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b... 28 4.6
gi|223468634 envoplakin-like [Homo sapiens] 27 6.0
gi|4502425 bone morphogenetic protein 6 preproprotein [Homo sapi... 27 7.8
gi|11067747 CDC5-like [Homo sapiens] 27 7.8
gi|194294540 sorting nexin 7 isoform a [Homo sapiens] 27 7.8
>gi|14211923 PKCI-1-related HIT protein [Homo sapiens]
Length = 163
Score = 323 bits (827), Expect = 5e-89
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MAAAVVLAAGLRAARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRIL 60
MAAAVVLAAGLRAARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRIL
Sbjct: 1 MAAAVVLAAGLRAARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRIL 60
Query: 61 DKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQ 120
DKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQ
Sbjct: 61 DKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQ 120
Query: 121 TAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG 163
TAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG
Sbjct: 121 TAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG 163
>gi|4885413 histidine triad nucleotide binding protein 1 [Homo
sapiens]
Length = 126
Score = 164 bits (415), Expect = 3e-41
Identities = 75/126 (59%), Positives = 98/126 (77%), Gaps = 2/126 (1%)
Query: 38 NEVAKAQQATPGGAAPTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKPI 97
+E+AKAQ A PGG TIF +I+ K +PA I++ED +CL F D++PQAP HFLVIPKK I
Sbjct: 3 DEIAKAQVARPGG--DTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHI 60
Query: 98 PRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQ 157
+IS AE++D+ LLGHL++V K+ A GL GYR+V+N+G G QSVYH+H+HVLGGRQ
Sbjct: 61 SQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQ 120
Query: 158 LQWPPG 163
+ WPPG
Sbjct: 121 MHWPPG 126
>gi|189217863 histidine triad nucleotide binding protein 3 [Homo
sapiens]
Length = 182
Score = 47.4 bits (111), Expect = 6e-06
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 55 IFSRILDKSLPADILY--EDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLG 112
+F RI + P L E++ + F+D+ P A H+LV+PKK I ++ +L+
Sbjct: 49 VFCRIAGRQDPGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVE 108
Query: 113 HLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVL 153
+++ V K + D + + S+ HLH+HVL
Sbjct: 109 NMVTVGKTILERNNFTDFTNVRMGFHMPPFCSISHLHLHVL 149
>gi|28329436 aprataxin isoform a [Homo sapiens]
Length = 342
Score = 45.8 bits (107), Expect = 2e-05
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 13 AARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRILDKSL--PADILY 70
AA+ A A TG+ G G V + K + A + +S+ L S+ P +Y
Sbjct: 128 AAQEAEAGTGLEPGSNSGQCSVP----LKKGKDAPIKKESLGHWSQGLKISMQDPKMQVY 183
Query: 71 EDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDG 130
+D+Q +V +D P+A H+LV+P I + E +LL H+ V ++
Sbjct: 184 KDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV--IVDFAGS 241
Query: 131 YRLVINDGKLGAQSVYHLHIHVL 153
+L G S+ H+H+HV+
Sbjct: 242 SKLRFRLGYHAIPSMSHVHLHVI 264
>gi|28329433 aprataxin isoform c [Homo sapiens]
Length = 254
Score = 45.8 bits (107), Expect = 2e-05
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 13 AARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRILDKSL--PADILY 70
AA+ A A TG+ G G V + K + A + +S+ L S+ P +Y
Sbjct: 40 AAQEAEAGTGLEPGSNSGQCSVP----LKKGKDAPIKKESLGHWSQGLKISMQDPKMQVY 95
Query: 71 EDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDG 130
+D+Q +V +D P+A H+LV+P I + E +LL H+ V ++
Sbjct: 96 KDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV--IVDFAGS 153
Query: 131 YRLVINDGKLGAQSVYHLHIHVL 153
+L G S+ H+H+HV+
Sbjct: 154 SKLRFRLGYHAIPSMSHVHLHVI 176
>gi|28329430 aprataxin isoform b [Homo sapiens]
Length = 306
Score = 45.8 bits (107), Expect = 2e-05
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 13 AARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRILDKSL--PADILY 70
AA+ A A TG+ G G V + K + A + +S+ L S+ P +Y
Sbjct: 142 AAQEAEAGTGLEPGSNSGQCSVP----LKKGKDAPIKKESLGHWSQGLKISMQDPKMQVY 197
Query: 71 EDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDG 130
+D+Q +V +D P+A H+LV+P I + E +LL H+ V ++
Sbjct: 198 KDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV--IVDFAGS 255
Query: 131 YRLVINDGKLGAQSVYHLHIHVL 153
+L G S+ H+H+HV+
Sbjct: 256 SKLRFRLGYHAIPSMSHVHLHVI 278
>gi|28329427 aprataxin isoform d [Homo sapiens]
Length = 168
Score = 42.4 bits (98), Expect = 2e-04
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 69 LYEDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLG 128
+Y+D+Q +V +D P+A H+LV+P I + E +LL H+ V ++
Sbjct: 8 VYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV--IVDFA 65
Query: 129 DGYRLVINDGKLGAQSVYHLHIHVL 153
+L G S+ H+H+HV+
Sbjct: 66 GSSKLRFRLGYHAIPSMSHVHLHVI 90
>gi|8923156 aprataxin isoform d [Homo sapiens]
Length = 168
Score = 42.4 bits (98), Expect = 2e-04
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 69 LYEDQQCLVFRDVAPQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLG 128
+Y+D+Q +V +D P+A H+LV+P I + E +LL H+ V ++
Sbjct: 8 VYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV--IVDFA 65
Query: 129 DGYRLVINDGKLGAQSVYHLHIHVL 153
+L G S+ H+H+HV+
Sbjct: 66 GSSKLRFRLGYHAIPSMSHVHLHVI 90
>gi|4503719 fragile histidine triad gene [Homo sapiens]
Length = 147
Score = 34.3 bits (77), Expect = 0.049
Identities = 19/71 (26%), Positives = 28/71 (39%)
Query: 83 PQAPVHFLVIPKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGA 142
P P H LV P +P+ R ++ L + G + DG
Sbjct: 30 PVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAG 89
Query: 143 QSVYHLHIHVL 153
Q+V H+H+HVL
Sbjct: 90 QTVKHVHVHVL 100
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 30.0 bits (66), Expect = 0.92
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 79 RDVAPQAPVHFLVIPKKPIPRISQAEEEDQQL 110
RD PVH PKKP P+I+Q ++E QQL
Sbjct: 684 RDKGKVKPVH----PKKPKPQINQWKQEKQQL 711
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 29.6 bits (65), Expect = 1.2
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 39 EVAKAQQATPGGAAPTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKPIP 98
+V +A P P +F P ++ E+ V + P AP V PKKP+P
Sbjct: 10649 KVPEAIPPKPESPPPEVFEE------PEEVALEEPPAEVVEEPEPAAPPQVTVPPKKPVP 10702
Score = 28.1 bits (61), Expect = 3.5
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 67 DILYEDQQCLVFRDVAPQAPVHFLVIPKKPIP 98
+ ++E+++ + +V P PV +P+KP+P
Sbjct: 9928 EYIHEEEEFITEEEVVPVIPVKVPEVPRKPVP 9959
>gi|239752671 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 22 GVRGGQVRGAAGVTDGNEVAKAQ---QATPGGAAPTIFSRILDKSLPADILYEDQQCLVF 78
G+RG A G+T +EVA+ + G A P + +LP L Q CL
Sbjct: 12 GLRGNFHTCAPGLTQRHEVARPPLPGSSEDGSATPDTWQLA---ALPLGSLSSGQLCLHL 68
Query: 79 RDVAPQAPVHFLVIPKKP 96
R + AP + PK P
Sbjct: 69 RGTSTPAPTCVPLAPKLP 86
>gi|239747188 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 22 GVRGGQVRGAAGVTDGNEVAKAQ---QATPGGAAPTIFSRILDKSLPADILYEDQQCLVF 78
G+RG A G+T +EVA+ + G A P + +LP L Q CL
Sbjct: 12 GLRGNFHTCAPGLTQRHEVARPPLPGSSEDGSATPDTWQLA---ALPLGSLSSGQLCLHL 68
Query: 79 RDVAPQAPVHFLVIPKKP 96
R + AP + PK P
Sbjct: 69 RGTSTPAPTCVPLAPKLP 86
>gi|239741014 PREDICTED: hypothetical protein XP_002342054 [Homo
sapiens]
Length = 147
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 22 GVRGGQVRGAAGVTDGNEVAKAQ---QATPGGAAPTIFSRILDKSLPADILYEDQQCLVF 78
G+RG A G+T +EVA+ + G A P + +LP L Q CL
Sbjct: 12 GLRGNFHTCAPGLTQRHEVARPPLPGSSEDGSATPDTWQLA---ALPLGSLSSGQLCLHL 68
Query: 79 RDVAPQAPVHFLVIPKKP 96
R + AP + PK P
Sbjct: 69 RGTSTPAPTCVPLAPKLP 86
>gi|110815813 ankyrin repeat and FYVE domain containing 1 isoform 1
[Homo sapiens]
Length = 1170
Score = 29.6 bits (65), Expect = 1.2
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 97 IPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHI 150
IP S + DQ +LG L T A+ LG G IND Q++ H+ I
Sbjct: 579 IPDFSLKDSRDQTVLGLALWTGMHTIAAQLLGSG--AAINDTMSDGQTLLHMAI 630
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 28.9 bits (63), Expect = 2.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 11 LRAARRAVAATGVRGGQVRGAAGVT-DGNEVAKAQQATPGGAAP 53
LRA RR++A VRG + G+ GV+ G + + GAAP
Sbjct: 47 LRACRRSLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAP 90
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 28.9 bits (63), Expect = 2.1
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 2 AAAVVLAAGLRAARRAVAATGVRGGQVRGAAGVTDGNE 39
AAA AA AA A AA G GAAG DG +
Sbjct: 164 AAATSAAAAAAAAAAAAAAAAGAGAPSVGAAGAADGGD 201
>gi|22212931 nucleolar protein family 6 gamma isoform [Homo sapiens]
Length = 699
Score = 28.9 bits (63), Expect = 2.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 93 PKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLV 134
P+ P PR + +D L HL L++ + A+GL DG L+
Sbjct: 290 PEPPTPRYNTWVLQDTVLESHLQLLSTILSSAQGLKDGVALL 331
>gi|18644728 nucleolar protein family 6 alpha isoform [Homo sapiens]
Length = 1146
Score = 28.9 bits (63), Expect = 2.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 93 PKKPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLV 134
P+ P PR + +D L HL L++ + A+GL DG L+
Sbjct: 290 PEPPTPRYNTWVLQDTVLESHLQLLSTILSSAQGLKDGVALL 331
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 28.1 bits (61), Expect = 3.5
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 2 AAAVVLAAGLRAARRAVAATGVRGGQVRGAAGVT-----DGNEVAKAQQATPGGAAPTIF 56
A V ++ G + TG GG+ A + + N + K + TPGGA P F
Sbjct: 1005 ATEVTVSGGFSVEETSCGDTGRSGGEALAVANDSTSTPQNANGLWKLKSTTPGGALPECF 1064
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 28.1 bits (61), Expect = 3.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 2 AAAVVLAAGLRAARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPG 49
A +L +G + RR AA G + ++RG G G E + Q G
Sbjct: 47 AGVKILGSGDKKLRRQKAAAGGKKARLRGQKGAVAGKEARQHWQKAAG 94
>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
[Homo sapiens]
Length = 730
Score = 27.7 bits (60), Expect = 4.6
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 7 LAAGLRAARRAVAATGVRGGQVRGAAGVTDG---------------NEVAKAQQATPGG- 50
+AAG+ AA VAAT ++ + GA GV G NE K + GG
Sbjct: 1 MAAGVEAAAE-VAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGN 59
Query: 51 -----AAPTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLV 91
A PT R ++P D+ ++ + LV V V L+
Sbjct: 60 RFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLM 105
>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
[Homo sapiens]
Length = 691
Score = 27.7 bits (60), Expect = 4.6
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 7 LAAGLRAARRAVAATGVRGGQVRGAAGVTDG---------------NEVAKAQQATPGG- 50
+AAG+ AA VAAT ++ + GA GV G NE K + GG
Sbjct: 1 MAAGVEAAAE-VAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGN 59
Query: 51 -----AAPTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLV 91
A PT R ++P D+ ++ + LV V V L+
Sbjct: 60 RFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLM 105
>gi|223468634 envoplakin-like [Homo sapiens]
Length = 301
Score = 27.3 bits (59), Expect = 6.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 9 AGLRAARRAVAATGVRGGQVRGAAGVTDGNEVAKAQQATPGGA 51
AGLR R A G GG RGA +G++ + A PGGA
Sbjct: 117 AGLR--RPVWAGHGGAGGTDRGAQHRAEGDQRPRRAAAEPGGA 157
>gi|4502425 bone morphogenetic protein 6 preproprotein [Homo
sapiens]
Length = 513
Score = 26.9 bits (58), Expect = 7.8
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 19 AATGVRGGQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRILDKSLPADILYEDQQCLVF 78
AA GGQ+ G DG + +Q P +P S L + L E Q+ ++
Sbjct: 34 AAAAAAGGQLLG-----DGGSPGRTEQPPP---SPQSSSGFLYRRLKTQEKREMQKEILS 85
Query: 79 RDVAPQAP--VHFLVIPKKPIPRISQAEEEDQQL 110
P P +H L P+ P R + +++ QQL
Sbjct: 86 VLGLPHRPRPLHGLQQPQPPALRQQEEQQQQQQL 119
>gi|11067747 CDC5-like [Homo sapiens]
Length = 802
Score = 26.9 bits (58), Expect = 7.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 96 PIPRISQAEEEDQQLLGHLLLVAKQTAKAEGL 127
P P+IS AE ++ +G +A+QTA+ G+
Sbjct: 298 PAPQISDAELQEVVKVGQASEIARQTAEESGI 329
>gi|194294540 sorting nexin 7 isoform a [Homo sapiens]
Length = 451
Score = 26.9 bits (58), Expect = 7.8
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 26 GQVRGAAGVTDGNEVAKAQQATPGGAAPTIFSRILDKSLPADI--LYEDQQCL-VFRDVA 82
G+ R + + G A +PGG AP S L A++ L ED+ L VF A
Sbjct: 3 GERRASQAPSSGLPAGGANGESPGGGAPFPGSSGSSALLQAEVLDLDEDEDDLEVFSKDA 62
Query: 83 PQAPVHFL--VIPKKPIPRISQAEEEDQQLLGHLLLVAKQ 120
++ ++P P+ I+Q + ED+ L L + +
Sbjct: 63 SLMDMNSFSPMMPTSPLSMINQIKFEDEPDLKDLFITVDE 102
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,348,112
Number of Sequences: 37866
Number of extensions: 283097
Number of successful extensions: 864
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 29
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.