Guide to the Human Genome
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Name: NOL6 Sequence: fasta or formatted (1146aa) NCBI GI: 18644728
Description:

nucleolar protein family 6 alpha isoform

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [699aa] nucleolar protein family 6 gamma isoform
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         89           3
 C cysteine            1.3         15           1
 D aspartate           4.7         54           2
 E glutamate           6.0         69           2
 F phenylalanine       3.9         45           2
 G glycine             6.4         73           2
 H histidine           2.9         33           2
 I isoleucine          2.3         26           1
 K lysine              3.3         38           3
 L leucine            14.6        167           3
 M methionine          1.7         19           2
 N asparagine          1.7         20           2
 P proline             7.9         90           3
 Q glutamine           5.6         64           3
 R arginine            7.4         85           2
 S serine              6.4         73           2
 T threonine           5.1         59           2
 V valine              7.9         91           2
 W tryptophan          1.3         15           1
 Y tyrosine            1.8         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleolar protein family 6 alpha isoform 
NOL6                  0.568   nucleolar protein family 6 gamma isoform 
USHBP1                0.008   Usher syndrome 1C binding protein 1 
TFEB                  0.004   transcription factor EB 
MEOX1                 0.004   mesenchyme homeobox 1 isoform 3 
MEOX1                 0.004   mesenchyme homeobox 1 isoform 1 
FAM83G                0.004   hypothetical protein LOC644815 
SKI                   0.004   v-ski sarcoma viral oncogene homolog 
LPHN1                 0.004   latrophilin 1 isoform 1 precursor 
LPHN1                 0.004   latrophilin 1 isoform 2 precursor 
CD22                  0.004   CD22 molecule 
GIGYF2                0.003   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.003   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.003   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.003   GRB10 interacting GYF protein 2 isoform b 
AGAP2                 0.003   centaurin, gamma 1 isoform PIKE-L 
NOS1AP                0.003   nitric oxide synthase 1 (neuronal) adaptor protein i...
NOS1AP                0.003   nitric oxide synthase 1 (neuronal) adaptor protein ...
TRIM29                0.003   tripartite motif protein TRIM29 
TAF1L                 0.003   TBP-associated factor RNA polymerase 1-like 
STARD9                0.003   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.003   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.003   PREDICTED: StAR-related lipid transfer (START) doma...
EVPL                  0.003   envoplakin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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