USHBP1 25553

Name: USHBP1	Sequence: fasta or formatted (703aa)		NCBI GI: 31543140
Description: Usher syndrome 1C binding protein 1		Referenced in: Auditory and Vestibular Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.7 89 5 C cysteine 0.9 6 1 D aspartate 3.0 21 1 E glutamate 10.8 76 3 F phenylalanine 1.1 8 1 G glycine 8.4 59 3 H histidine 2.4 17 1 I isoleucine 1.1 8 1 K lysine 3.1 22 2 L leucine 12.5 88 3 M methionine 2.3 16 1 N asparagine 1.1 8 1 P proline 7.0 49 3 Q glutamine 8.0 56 2 R arginine 8.1 57 2 S serine 9.0 63 4 T threonine 3.0 21 1 V valine 3.7 26 1 W tryptophan 1.0 7 1 Y tyrosine 0.9 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Usher syndrome 1C binding protein 1 MCC 0.101 mutated in colorectal cancers isoform 1 MCC 0.101 mutated in colorectal cancers isoform 2 NUMA1 0.027 nuclear mitotic apparatus protein 1 CEP250 0.022 centrosomal protein 2 MYH14 0.022 myosin, heavy chain 14 isoform 1 MYH14 0.022 myosin, heavy chain 14 isoform 2 MYH14 0.022 myosin, heavy chain 14 isoform 3 CCDC88B 0.022 coiled-coil domain containing 88 FYCO1 0.021 FYVE and coiled-coil domain containing 1 CROCC 0.021 ciliary rootlet coiled-coil CCDC88C 0.020 DVL-binding protein DAPLE PLEC1 0.018 plectin 1 isoform 11 PLEC1 0.018 plectin 1 isoform 10 PLEC1 0.018 plectin 1 isoform 8 PLEC1 0.018 plectin 1 isoform 7 PLEC1 0.018 plectin 1 isoform 6 PLEC1 0.018 plectin 1 isoform 3 PLEC1 0.018 plectin 1 isoform 2 PLEC1 0.018 plectin 1 isoform 1 PHLDB1 0.017 pleckstrin homology-like domain, family B, member 1... AMOTL2 0.017 angiomotin like 2 GOLGA3 0.017 Golgi autoantigen, golgin subfamily a, 3 RRBP1 0.016 ribosome binding protein 1 RRBP1 0.016 ribosome binding protein 1 PHLDB1 0.014 pleckstrin homology-like domain, family B, member 1... PHLDB1 0.014 pleckstrin homology-like domain, family B, member 1 ... FAM184B 0.014 hypothetical protein LOC27146 NOL6 0.013 nucleolar protein family 6 alpha isoform CGN 0.013 cingulin Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.