Guide to the Human Genome
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Name: LOC100293374 Sequence: fasta or formatted (147aa) NCBI GI: 239752671
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         13           2
 C cysteine            3.4          5           1
 D aspartate           2.0          3           1
 E glutamate           4.1          6           1
 F phenylalanine       2.0          3           1
 G glycine             8.2         12           1
 H histidine           4.1          6           1
 I isoleucine          1.4          2           1
 K lysine              2.7          4           2
 L leucine            10.9         16           1
 M methionine          2.0          3           1
 N asparagine          0.7          1           1
 P proline            10.2         15           2
 Q glutamine           2.7          4           1
 R arginine            8.8         13           2
 S serine             10.9         16           2
 T threonine           7.5         11           1
 V valine              4.1          6           1
 W tryptophan          4.8          7           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287750          1.000   PREDICTED: hypothetical protein 
LOC100287750          1.000   PREDICTED: hypothetical protein XP_002342054 
C15orf39              0.034   hypothetical protein LOC56905 
MESP2                 0.027   mesoderm posterior 2 homolog 
LOC728888             0.021   PREDICTED: similar to acyl-CoA synthetase medium-ch...
SH3BP1                0.021   SH3-domain binding protein 1 
RFX5                  0.017   regulatory factor X, 5 
RFX5                  0.017   regulatory factor X, 5 
CFP                   0.017   complement factor properdin precursor 
CFP                   0.017   complement factor properdin precursor 
SF1                   0.017   splicing factor 1 isoform 3 
APPL1                 0.017   adaptor protein, phosphotyrosine interaction, PH doma...
TNFRSF1B              0.017   tumor necrosis factor receptor 2 precursor 
HINT2                 0.017   PKCI-1-related HIT protein 
BCORL1                0.017   BCL6 co-repressor-like 1 
SSPO                  0.017   SCO-spondin 
PPP2R3B               0.017   protein phosphatase 2, regulatory subunit B'', beta ...
GSG2                  0.014   haspin 
LOC100132247          0.014   hypothetical protein LOC100132247 
LOC100291676          0.014   PREDICTED: hypothetical protein XP_002346070 
LOC100291498          0.014   PREDICTED: hypothetical protein XP_002346961 
LOC100288107          0.014   PREDICTED: hypothetical protein XP_002342825 
LOC100288107          0.014   PREDICTED: hypothetical protein 
PDZD2                 0.014   PDZ domain containing 2 
SIX5                  0.014   sine oculis homeobox homolog 5 
KIAA1688              0.014   KIAA1688 protein 
LOC100291299          0.010   PREDICTED: hypothetical protein XP_002347506 
LOC100287558          0.010   PREDICTED: hypothetical protein XP_002343325 
PHLDB1                0.010   pleckstrin homology-like domain, family B, member 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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