Guide to the Human Genome
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Name: LOC643446 Sequence: fasta or formatted (305aa) NCBI GI: 88973230
Description:

PREDICTED: similar to ribonucleic acid binding protein S1 isoform 3

Referenced in:

RNases and RNA Stability

Other entries for this name:
alt mRNA [305aa] PREDICTED: similar to ribonucleic acid binding protein S1
alt mRNA [305aa] PREDICTED: similar to ribonucleic acid binding protein S1
alt prot [305aa] PREDICTED: similar to ribonucleic acid binding protein S1 isoform 2
alt mRNA [305aa] PREDICTED: similar to ribonucleic acid binding protein S1
alt prot [305aa] PREDICTED: similar to ribonucleic acid binding protein S1 isoform 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          9           1
 C cysteine            0.3          1           1
 D aspartate           4.6         14           1
 E glutamate           4.3         13           1
 F phenylalanine       1.0          3           1
 G glycine             5.6         17           2
 H histidine           2.6          8           1
 I isoleucine          2.3          7           1
 K lysine              9.5         29           3
 L leucine             3.0          9           2
 M methionine          3.0          9           1
 N asparagine          2.0          6           2
 P proline             8.9         27           4
 Q glutamine           1.0          3           1
 R arginine           16.1         49           3
 S serine             23.6         72           8
 T threonine           5.2         16           1
 V valine              3.0          9           2
 W tryptophan          0.7          2           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ribonucleic acid binding prote... 
LOC643446             1.000   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             1.000   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             1.000   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.995   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.995   PREDICTED: similar to ribonucleic acid binding prot...
RNPS1                 0.974   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.974   RNA-binding protein S1, serine-rich domain 
PNN                   0.109   pinin, desmosome associated protein 
PPRC1                 0.095   peroxisome proliferator-activated receptor gamma, co...
TRA2B                 0.095   splicing factor, arginine/serine-rich 10 
PRPF4B                0.092   serine/threonine-protein kinase PRP4K 
ZC3H18                0.092   zinc finger CCCH-type containing 18 
SFRS2                 0.090   splicing factor, arginine/serine-rich 2 
SFRS4                 0.088   splicing factor, arginine/serine-rich 4 
ZRANB2                0.086   zinc finger protein 265 isoform 1 
ZRANB2                0.086   zinc finger protein 265 isoform 2 
SRRM2                 0.085   splicing coactivator subunit SRm300 
TNRC18                0.085   trinucleotide repeat containing 18 
SRRM1                 0.081   serine/arginine repetitive matrix 1 
SFRS3                 0.078   splicing factor, arginine/serine-rich 3 
TRA2A                 0.078   transformer-2 alpha 
MLLT3                 0.076   myeloid/lymphoid or mixed-lineage leukemia (trithor...
LOC100170229          0.074   hypothetical protein LOC100170229 
SON                   0.074   SON DNA-binding protein isoform F 
SON                   0.074   SON DNA-binding protein isoform B 
SPEN                  0.073   spen homolog, transcriptional regulator 
SETD1A                0.073   SET domain containing 1A 
SFRS16                0.073   splicing factor, arginine/serine-rich 16 
RSRC2                 0.073   arginine/serine-rich coiled-coil 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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