Guide to the Human Genome
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Name: PRPF4B Sequence: fasta or formatted (1007aa) NCBI GI: 89276756
Description:

serine/threonine-protein kinase PRP4K

Referenced in:

Additional Serine / Threonine Protein Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         45           3
 C cysteine            0.6          6           1
 D aspartate           7.0         70           2
 E glutamate           7.6         77           3
 F phenylalanine       2.1         21           1
 G glycine             4.3         43           2
 H histidine           2.6         26           1
 I isoleucine          4.5         45           3
 K lysine             12.7        128           4
 L leucine             7.4         75           2
 M methionine          2.0         20           1
 N asparagine          4.1         41           2
 P proline             4.3         43           1
 Q glutamine           3.4         34           2
 R arginine           12.2        123           4
 S serine             11.6        117           3
 T threonine           3.2         32           2
 V valine              3.8         38           2
 W tryptophan          0.3          3           1
 Y tyrosine            2.0         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serine/threonine-protein kinase PRP4K 
LOC653155             0.098   PREDICTED: similar to hCG1820375 
LOC653155             0.098   PREDICTED: similar to hCG1820375 
LOC653155             0.098   PREDICTED: hypothetical protein LOC653155 
DYRK1B                0.076   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK2                 0.076   dual-specificity tyrosine-(Y)-phosphorylation regul...
DYRK2                 0.076   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.075   dual-specificity tyrosine-(Y)-phosphorylation regulat...
HIPK3                 0.075   homeodomain interacting protein kinase 3 isoform 2 ...
HIPK3                 0.075   homeodomain interacting protein kinase 3 isoform 1 ...
CLK2                  0.074   CDC-like kinase 2 
DYRK1A                0.074   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.074   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.074   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.074   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.074   dual-specificity tyrosine-(Y)-phosphorylation regula...
HIPK2                 0.074   homeodomain interacting protein kinase 2 isoform 2 ...
HIPK2                 0.074   homeodomain interacting protein kinase 2 isoform 1 ...
DYRK1B                0.074   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK4                 0.072   dual-specificity tyrosine-(Y)-phosphorylation regula...
HIPK1                 0.072   homeodomain-interacting protein kinase 1 isoform 1 [...
HIPK1                 0.072   homeodomain-interacting protein kinase 1 isoform 2 [...
DYRK3                 0.070   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK3                 0.070   dual-specificity tyrosine-(Y)-phosphorylation regula...
CLK1                  0.068   CDC-like kinase 1 isoform 2 
CLK1                  0.068   CDC-like kinase 1 isoform 1 
CLK3                  0.066   CDC-like kinase 3 isoform a 
CLK3                  0.066   CDC-like kinase 3 isoform b 
CLK4                  0.066   CDC-like kinase 4 
SRRM2                 0.061   splicing coactivator subunit SRm300 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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