Guide to the Human Genome
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Name: FAM155B Sequence: fasta or formatted (472aa) NCBI GI: 56676337
Description:

transmembrane protein 28

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         39           3
 C cysteine            5.7         27           6
 D aspartate           4.2         20           1
 E glutamate           5.7         27           2
 F phenylalanine       3.4         16           2
 G glycine             6.6         31           4
 H histidine           3.4         16           2
 I isoleucine          1.3          6           1
 K lysine              4.7         22           4
 L leucine            11.4         54           3
 M methionine          1.5          7           1
 N asparagine          1.5          7           1
 P proline            10.0         47           5
 Q glutamine           4.0         19           3
 R arginine            6.4         30           1
 S serine              7.4         35           2
 T threonine           4.7         22           2
 V valine              4.7         22           2
 W tryptophan          2.3         11           1
 Y tyrosine            3.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 28 
FAM155A               0.232   family with sequence similarity 155, member A [Homo...
RAPH1                 0.024   Ras association and pleckstrin homology domains 1 is...
SCARF1                0.023   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.023   scavenger receptor class F, member 1 isoform 5 prec...
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
IER5L                 0.019   immediate early response 5-like 
LOC729370             0.018   PREDICTED: hypothetical protein 
INPPL1                0.018   inositol polyphosphate phosphatase-like 1 
CACNA1H               0.016   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.016   calcium channel, voltage-dependent, T type, alpha 1H...
TMEM55B               0.016   transmembrane protein 55B isoform 1 
RBBP6                 0.016   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.016   retinoblastoma-binding protein 6 isoform 1 
MARCH11               0.016   membrane-associated ring finger (C3HC4) 11 
SCARF1                0.016   scavenger receptor class F, member 1 isoform 3 precu...
BAI1                  0.016   brain-specific angiogenesis inhibitor 1 precursor [...
MYPOP                 0.016   Myb protein P42POP 
PRB2                  0.015   proline-rich protein BstNI subfamily 2 
RERE                  0.015   atrophin-1 like protein isoform b 
RERE                  0.015   atrophin-1 like protein isoform a 
RERE                  0.015   atrophin-1 like protein isoform a 
SF1                   0.015   splicing factor 1 isoform 2 
SF1                   0.015   splicing factor 1 isoform 1 
ESX1                  0.015   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
WASF2                 0.014   WAS protein family, member 2 
FMN2                  0.014   formin 2 
PRB1                  0.014   proline-rich protein BstNI subfamily 1 isoform 1 pre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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