Guide to the Human Genome
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Name: RAPH1 Sequence: fasta or formatted (1250aa) NCBI GI: 47132519
Description:

Ras association and pleckstrin homology domains 1 isoform 1

Referenced in:

Protein Composition and Structure
Ras

Other entries for this name:
alt prot [644aa] Ras association and pleckstrin homology domains 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         84           2
 C cysteine            0.9         11           2
 D aspartate           4.4         55           2
 E glutamate           5.0         62           3
 F phenylalanine       1.8         23           1
 G glycine             3.8         48           2
 H histidine           1.8         22           1
 I isoleucine          3.3         41           1
 K lysine              7.1         89           2
 L leucine             7.4         93           2
 M methionine          2.1         26           2
 N asparagine          2.8         35           1
 P proline            16.8        210          20
 Q glutamine           5.8         73           2
 R arginine            3.5         44           2
 S serine             12.0        150           5
 T threonine           5.5         69           1
 V valine              6.2         78           2
 W tryptophan          0.9         11           1
 Y tyrosine            2.1         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras association and pleckstrin homology domains 1 is... 
RAPH1                 0.445   Ras association and pleckstrin homology domains 1 is...
APBB1IP               0.179   amyloid beta (A4) precursor protein-binding, family ...
FMN2                  0.067   formin 2 
NACA                  0.059   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.057   PREDICTED: hypothetical protein FLJ22184 
PRG4                  0.057   proteoglycan 4 isoform D 
PRG4                  0.057   proteoglycan 4 isoform C 
GRB14                 0.053   growth factor receptor-bound protein 14 
PRG4                  0.053   proteoglycan 4 isoform B 
PRG4                  0.053   proteoglycan 4 isoform A 
WIPF3                 0.053   WAS/WASL interacting protein family, member 3 [Homo...
MUC2                  0.051   mucin 2 precursor 
GRB10                 0.050   growth factor receptor-bound protein 10 isoform c [H...
GRB10                 0.050   growth factor receptor-bound protein 10 isoform c [H...
GRB10                 0.050   growth factor receptor-bound protein 10 isoform a [H...
FLJ22184              0.049   PREDICTED: hypothetical protein FLJ22184 
BRD4                  0.047   bromodomain-containing protein 4 isoform long 
GRB7                  0.047   growth factor receptor-bound protein 7 
GRB7                  0.047   growth factor receptor-bound protein 7 
FLJ22184              0.046   PREDICTED: hypothetical protein LOC80164 
MLL2                  0.046   myeloid/lymphoid or mixed-lineage leukemia 2 
TTN                   0.044   titin isoform N2-A 
PRB2                  0.044   proline-rich protein BstNI subfamily 2 
RERE                  0.044   atrophin-1 like protein isoform b 
RERE                  0.044   atrophin-1 like protein isoform a 
RERE                  0.044   atrophin-1 like protein isoform a 
KIAA1522              0.041   hypothetical protein LOC57648 
WNK2                  0.040   WNK lysine deficient protein kinase 2 
KDM6B                 0.040   lysine (K)-specific demethylase 6B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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