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Name: CACNA1H Sequence: fasta or formatted (2347aa) NCBI GI: 53832011
Description:

calcium channel, voltage-dependent, T type, alpha 1H subunit isoform b

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [2353aa] calcium channel, voltage-dependent, T type, alpha 1H subunit isof...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2        193           3
 C cysteine            2.4         56           2
 D aspartate           4.4        104           3
 E glutamate           6.2        145           2
 F phenylalanine       4.4        104           2
 G glycine             7.8        184           3
 H histidine           2.6         61           9
 I isoleucine          3.9         91           2
 K lysine              2.9         67           3
 L leucine            10.4        243           3
 M methionine          2.4         56           2
 N asparagine          2.8         66           3
 P proline             8.0        188           3
 Q glutamine           2.8         65           2
 R arginine            7.7        181           4
 S serine              8.1        191           4
 T threonine           4.3        100           2
 V valine              7.0        165           3
 W tryptophan          1.4         33           1
 Y tyrosine            2.3         54           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, T type, alpha 1H... 
CACNA1H               0.998   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1G               0.489   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.487   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.486   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.486   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.485   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.484   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.482   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.479   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.470   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.470   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.469   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.467   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.466   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.466   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.334   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1I               0.333   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.332   calcium channel, voltage-dependent, T type, alpha 1I...
SCN5A                 0.089   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.089   voltage-gated sodium channel type V alpha isoform c...
SCN5A                 0.089   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.089   voltage-gated sodium channel type V alpha isoform f...
SCN4A                 0.088   voltage-gated sodium channel type 4 alpha 
SCN5A                 0.084   voltage-gated sodium channel type V alpha isoform d...
SCN10A                0.084   sodium channel, voltage-gated, type X, alpha 
SCN11A                0.069   sodium channel, voltage-gated, type XI, alpha [Homo...
SCN9A                 0.067   sodium channel, voltage-gated, type IX, alpha 
SCN3A                 0.066   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.066   sodium channel, voltage-gated, type III, alpha isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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