Guide to the Human Genome
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Name: SLC26A1 Sequence: fasta or formatted (701aa) NCBI GI: 47131207
Description:

solute carrier family 26, member 1 isoform a

Referenced in:

Solute Carrier Families

Other entries for this name:
alt mRNA [701aa] solute carrier family 26, member 1 isoform a
alt prot [224aa] solute carrier family 26, member 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         81           3
 C cysteine            2.7         19           2
 D aspartate           4.1         29           1
 E glutamate           3.6         25           3
 F phenylalanine       3.6         25           2
 G glycine             8.7         61           2
 H histidine           1.9         13           1
 I isoleucine          2.7         19           2
 K lysine              1.3          9           1
 L leucine            15.7        110           3
 M methionine          2.3         16           1
 N asparagine          1.0          7           1
 P proline             5.3         37           2
 Q glutamine           4.0         28           2
 R arginine            7.3         51           2
 S serine              7.0         49           2
 T threonine           5.0         35           1
 V valine              9.3         65           2
 W tryptophan          0.9          6           1
 Y tyrosine            2.3         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 26, member 1 isoform a 
SLC26A1               1.000   solute carrier family 26, member 1 isoform a 
SLC26A2               0.457   solute carrier family 26 member 2 
SLC26A5               0.288   prestin isoform a 
SLC26A6               0.286   solute carrier family 26, member 6 isoform 3 
SLC26A6               0.282   solute carrier family 26, member 6 isoform 2 
SLC26A6               0.281   solute carrier family 26, member 6 isoform 4 
SLC26A6               0.281   solute carrier family 26, member 6 isoform 1 
SLC26A4               0.281   pendrin 
SLC26A5               0.278   prestin isoform b 
SLC26A1               0.269   solute carrier family 26, member 1 isoform b 
SLC26A3               0.239   solute carrier family 26, member 3 
SLC26A5               0.230   prestin isoform c 
SLC26A9               0.205   solute carrier family 26, member 9 isoform a 
SLC26A9               0.205   solute carrier family 26, member 9 isoform b 
SLC26A7               0.176   solute carrier family 26, member 7 isoform a 
SLC26A7               0.176   solute carrier family 26, member 7 isoform b 
SLC26A10              0.159   solute carrier family 26, member 10 
SLC26A8               0.155   solute carrier family 26, member 8 isoform a 
SLC26A5               0.130   prestin isoform d 
SLC26A11              0.112   solute carrier family 26, member 11 
SLC26A8               0.084   solute carrier family 26, member 8 isoform b 
SLC26A9               0.076   solute carrier family 26, member 9 isoform c 
LOC649201             0.007   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649201             0.007   PREDICTED: similar to paraneoplastic antigen MA1 [H...
CPT1B                 0.004   carnitine palmitoyltransferase 1B isoform d 
CPT1B                 0.004   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.004   carnitine palmitoyltransferase 1B isoform c 
CPT1B                 0.004   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.004   carnitine palmitoyltransferase 1B isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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