Guide to the Human Genome
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Name: SLC26A8 Sequence: fasta or formatted (865aa) NCBI GI: 20336285
Description:

solute carrier family 26, member 8 isoform b

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [970aa] solute carrier family 26, member 8 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         41           2
 C cysteine            2.1         18           2
 D aspartate           3.8         33           2
 E glutamate           6.2         54           3
 F phenylalanine       5.5         48           2
 G glycine             4.6         40           2
 H histidine           2.1         18           2
 I isoleucine          7.5         65           2
 K lysine              3.8         33           2
 L leucine            10.4         90           3
 M methionine          2.9         25           2
 N asparagine          5.0         43           2
 P proline             4.6         40           2
 Q glutamine           4.9         42           2
 R arginine            4.6         40           3
 S serine             11.6        100           3
 T threonine           5.2         45           3
 V valine              6.5         56           2
 W tryptophan          0.9          8           1
 Y tyrosine            3.0         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 26, member 8 isoform b 
SLC26A8               0.753   solute carrier family 26, member 8 isoform a 
SLC26A6               0.124   solute carrier family 26, member 6 isoform 4 
SLC26A6               0.124   solute carrier family 26, member 6 isoform 1 
SLC26A6               0.123   solute carrier family 26, member 6 isoform 2 
SLC26A6               0.110   solute carrier family 26, member 6 isoform 3 
SLC26A9               0.091   solute carrier family 26, member 9 isoform a 
SLC26A9               0.091   solute carrier family 26, member 9 isoform b 
SLC26A5               0.086   prestin isoform b 
SLC26A5               0.086   prestin isoform a 
SLC26A9               0.083   solute carrier family 26, member 9 isoform c 
SLC26A4               0.082   pendrin 
SLC26A3               0.079   solute carrier family 26, member 3 
SLC26A2               0.079   solute carrier family 26 member 2 
SLC26A1               0.067   solute carrier family 26, member 1 isoform a 
SLC26A1               0.067   solute carrier family 26, member 1 isoform a 
SLC26A5               0.066   prestin isoform c 
SLC26A7               0.044   solute carrier family 26, member 7 isoform a 
SLC26A7               0.044   solute carrier family 26, member 7 isoform b 
SLC26A10              0.039   solute carrier family 26, member 10 
SLC26A5               0.028   prestin isoform d 
SLC26A11              0.027   solute carrier family 26, member 11 
SLC26A1               0.023   solute carrier family 26, member 1 isoform b 
NOL3                  0.015   nucleolar protein 3 
PNN                   0.011   pinin, desmosome associated protein 
TRIM44                0.011   DIPB protein 
PHLDA1                0.011   pleckstrin homology-like domain, family A, member 1 ...
GNAS                  0.011   GNAS complex locus NESP55 
BAT2D1                0.011   HBxAg transactivated protein 2 
CIZ1                  0.010   CDKN1A interacting zinc finger protein 1 isoform 4 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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