Guide to the Human Genome
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Name: SLC26A3 Sequence: fasta or formatted (764aa) NCBI GI: 4557535
Description:

solute carrier family 26, member 3

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         53           4
 C cysteine            1.3         10           2
 D aspartate           5.2         40           3
 E glutamate           3.4         26           2
 F phenylalanine       6.9         53           2
 G glycine             6.5         50           2
 H histidine           1.4         11           2
 I isoleucine          9.3         71           2
 K lysine              6.0         46           2
 L leucine            10.9         83           2
 M methionine          1.4         11           2
 N asparagine          4.1         31           2
 P proline             4.6         35           2
 Q glutamine           3.1         24           1
 R arginine            3.9         30           2
 S serine              7.1         54           2
 T threonine           5.0         38           2
 V valine              9.3         71           2
 W tryptophan          0.7          5           1
 Y tyrosine            2.9         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 26, member 3 
SLC26A4               0.447   pendrin 
SLC26A5               0.331   prestin isoform a 
SLC26A6               0.325   solute carrier family 26, member 6 isoform 2 
SLC26A6               0.322   solute carrier family 26, member 6 isoform 4 
SLC26A6               0.322   solute carrier family 26, member 6 isoform 1 
SLC26A6               0.318   solute carrier family 26, member 6 isoform 3 
SLC26A5               0.318   prestin isoform b 
SLC26A9               0.281   solute carrier family 26, member 9 isoform a 
SLC26A9               0.281   solute carrier family 26, member 9 isoform b 
SLC26A5               0.274   prestin isoform c 
SLC26A2               0.254   solute carrier family 26 member 2 
SLC26A1               0.219   solute carrier family 26, member 1 isoform a 
SLC26A1               0.219   solute carrier family 26, member 1 isoform a 
SLC26A7               0.206   solute carrier family 26, member 7 isoform a 
SLC26A7               0.204   solute carrier family 26, member 7 isoform b 
SLC26A8               0.196   solute carrier family 26, member 8 isoform a 
SLC26A5               0.166   prestin isoform d 
SLC26A10              0.160   solute carrier family 26, member 10 
SLC26A9               0.123   solute carrier family 26, member 9 isoform c 
SLC26A11              0.100   solute carrier family 26, member 11 
SLC26A8               0.090   solute carrier family 26, member 8 isoform b 
SLC26A1               0.056   solute carrier family 26, member 1 isoform b 
TPTE2                 0.005   TPTE and PTEN homologous inositol lipid phosphatase...
TPTE2                 0.005   TPTE and PTEN homologous inositol lipid phosphatase...
TPTE2                 0.005   TPTE and PTEN homologous inositol lipid phosphatase...
C10orf18              0.005   hypothetical protein LOC54906 
ATP6V0B               0.004   ATPase, H+ transporting, lysosomal 21kDa, V0 subunit...
ATP6V0B               0.004   ATPase, H+ transporting, lysosomal 21kDa, V0 subunit ...
LOC100290489          0.003   PREDICTED: hypothetical protein XP_002346789 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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