Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CRYBB2 Sequence: fasta or formatted (205aa) NCBI GI: 4503063
Description:

crystallin, beta B2

Referenced in:

Crystallins and Other Eye Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          8           1
 C cysteine            1.0          2           1
 D aspartate           5.4         11           3
 E glutamate           6.8         14           1
 F phenylalanine       3.9          8           1
 G glycine             8.8         18           1
 H histidine           4.4          9           1
 I isoleucine          4.4          9           3
 K lysine              6.3         13           2
 L leucine             4.9         10           2
 M methionine          1.5          3           1
 N asparagine          3.9          8           1
 P proline             6.3         13           1
 Q glutamine           8.3         17           1
 R arginine            4.9         10           2
 S serine              9.3         19           2
 T threonine           2.9          6           1
 V valine              6.3         13           1
 W tryptophan          2.4          5           1
 Y tyrosine            4.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   crystallin, beta B2 
CRYBB3                0.538   crystallin, beta B3 
CRYBB1                0.521   crystallin, beta B1 
CRYBA1                0.343   crystallin, beta A3 
CRYBA4                0.304   crystallin, beta A4 
CRYBA2                0.265   crystallin, beta A2 
CRYBA2                0.265   crystallin, beta A2 
CRYBA2                0.265   crystallin, beta A2 
CRYGS                 0.226   crystallin, gamma S 
CRYGB                 0.226   crystallin, gamma B 
CRYGC                 0.217   crystallin, gamma C 
AIM1L                 0.209   absent in melanoma 1-like 
CRYGA                 0.207   crystallin, gamma A 
CRYBG3                0.197   beta-gamma crystallin domain containing 3 
AIM1                  0.195   absent in melanoma 1 
CRYGD                 0.190   crystallin, gamma D 
CRYGN                 0.136   gammaN-crystallin 
ARHGAP21              0.007   Rho GTPase activating protein 21 
RERE                  0.007   atrophin-1 like protein isoform b 
RERE                  0.007   atrophin-1 like protein isoform a 
RERE                  0.007   atrophin-1 like protein isoform a 
LRRC50                0.007   leucine rich repeat containing 50 
C7orf31               0.007   hypothetical protein LOC136895 
PLCB2                 0.005   phospholipase C, beta 2 
NEB                   0.005   nebulin 
KIAA0913              0.005   hypothetical protein LOC23053 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press