Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NEB Sequence: fasta or formatted (6669aa) NCBI GI: 115527120
Description:

nebulin

Referenced in:

Protein Composition and Structure
Gene Structure
Muscle
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2        478           2
 C cysteine            0.8         52           1
 D aspartate           7.8        521           3
 E glutamate           6.1        409           3
 F phenylalanine       1.8        120           2
 G glycine             3.3        219           2
 H histidine           3.1        208           3
 I isoleucine          5.0        334           2
 K lysine             12.4        829           3
 L leucine             7.2        478           2
 M methionine          2.8        185           2
 N asparagine          4.6        305           2
 P proline             4.1        271           2
 Q glutamine           4.8        317           2
 R arginine            4.1        273           2
 S serine              6.4        425           3
 T threonine           5.3        352           4
 V valine              5.9        392           2
 W tryptophan          1.4         91           1
 Y tyrosine            6.1        410           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nebulin 
NRAP                  0.086   nebulin-related anchoring protein isoform S 
NRAP                  0.085   nebulin-related anchoring protein isoform C 
NEBL                  0.045   nebulette sarcomeric isoform 
LOC100134308          0.035   PREDICTED: similar to nebulin 
LOC100133732          0.017   PREDICTED: similar to nebulin 
LASP1                 0.007   LIM and SH3 protein 1 
NEBL                  0.006   nebulette non-muscle isoform 
CTTN                  0.003   cortactin isoform a 
CTTN                  0.003   cortactin isoform b 
SORBS2                0.003   sorbin and SH3 domain containing 2 isoform 8 
SORBS2                0.003   sorbin and SH3 domain containing 2 isoform 3 
PACSIN3               0.003   protein kinase C and casein kinase substrate in neur...
GOLGA4                0.002   golgi autoantigen, golgin subfamily a, 4 
DBNL                  0.002   drebrin-like isoform c 
DBNL                  0.002   drebrin-like isoform b 
DBNL                  0.002   drebrin-like isoform a 
SORBS3                0.002   sorbin and SH3 domain containing 3 isoform 1 
SORBS3                0.002   sorbin and SH3 domain containing 3 isoform 2 
SORBS1                0.002   sorbin and SH3 domain containing 1 isoform 5 
PACSIN1               0.002   protein kinase C and casein kinase substrate in neur...
SORBS1                0.002   sorbin and SH3 domain containing 1 isoform 7 
SORBS1                0.002   sorbin and SH3 domain containing 1 isoform 6 
SORBS1                0.002   sorbin and SH3 domain containing 1 isoform 2 
SORBS1                0.002   sorbin and SH3 domain containing 1 isoform 1 
PACSIN2               0.002   protein kinase C and casein kinase substrate in neu...
SORBS2                0.002   sorbin and SH3 domain containing 2 isoform 5 
SORBS1                0.002   sorbin and SH3 domain containing 1 isoform 4 
SORBS1                0.002   sorbin and SH3 domain containing 1 isoform 3 
CYLC1                 0.002   cylicin, basic protein of sperm head cytoskeleton 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press