Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CRYGB Sequence: fasta or formatted (175aa) NCBI GI: 148491074
Description:

crystallin, gamma B

Referenced in:

Crystallins and Other Eye Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.3          4           1
 C cysteine            4.0          7           2
 D aspartate           6.3         11           2
 E glutamate           6.3         11           1
 F phenylalanine       3.4          6           1
 G glycine             7.4         13           1
 H histidine           2.3          4           1
 I isoleucine          5.1          9           1
 K lysine              1.7          3           1
 L leucine             8.6         15           2
 M methionine          4.0          7           1
 N asparagine          3.4          6           1
 P proline             5.1          9           2
 Q glutamine           5.1          9           2
 R arginine           10.9         19           2
 S serine              7.4         13           1
 T threonine           2.9          5           2
 V valine              2.9          5           1
 W tryptophan          2.3          4           1
 Y tyrosine            8.6         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   crystallin, gamma B 
CRYGC                 0.783   crystallin, gamma C 
CRYGA                 0.749   crystallin, gamma A 
CRYGD                 0.727   crystallin, gamma D 
CRYGS                 0.544   crystallin, gamma S 
CRYBB2                0.262   crystallin, beta B2 
AIM1L                 0.259   absent in melanoma 1-like 
CRYBA1                0.251   crystallin, beta A3 
CRYBB3                0.245   crystallin, beta B3 
CRYBA4                0.239   crystallin, beta A4 
CRYBB1                0.231   crystallin, beta B1 
AIM1                  0.203   absent in melanoma 1 
CRYBA2                0.194   crystallin, beta A2 
CRYBA2                0.194   crystallin, beta A2 
CRYBA2                0.194   crystallin, beta A2 
CRYGN                 0.192   gammaN-crystallin 
CRYBG3                0.169   beta-gamma crystallin domain containing 3 
BIRC6                 0.020   baculoviral IAP repeat-containing 6 
PCDH12                0.014   protocadherin 12 precursor 
VTN                   0.006   vitronectin precursor 
ITGB2                 0.006   integrin, beta 2 precursor 
ITGB2                 0.006   integrin, beta 2 precursor 
SARDH                 0.006   sarcosine dehydrogenase precursor 
SARDH                 0.006   sarcosine dehydrogenase precursor 
KIAA0586              0.006   talpid3 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press