Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 187829485
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187829485 autism susceptibility candidate 2 isoform 3 [Homo
sapiens]
(266 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187829485 autism susceptibility candidate 2 isoform 3 [Homo s... 533 e-152
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 441 e-124
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa... 441 e-124
gi|217416343 fibrosin-like 1 [Homo sapiens] 117 8e-27
gi|50962882 G patch domain containing 8 [Homo sapiens] 52 4e-07
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 44 2e-04
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 44 2e-04
gi|34452713 Ca2+-dependent secretion activator isoform 2 [Homo s... 42 6e-04
gi|34452715 Ca2+-dependent secretion activator isoform 1 [Homo s... 42 6e-04
gi|34452711 Ca2+-dependent secretion activator isoform 3 [Homo s... 42 6e-04
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 41 0.001
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 40 0.002
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 40 0.002
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 40 0.002
gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [H... 40 0.003
gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [H... 40 0.003
gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... 40 0.003
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 40 0.003
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 39 0.004
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 39 0.004
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 37 0.018
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 37 0.018
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 37 0.018
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.018
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 37 0.023
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 37 0.023
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 37 0.023
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 37 0.023
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 37 0.023
>gi|187829485 autism susceptibility candidate 2 isoform 3 [Homo
sapiens]
Length = 266
Score = 533 bits (1373), Expect = e-152
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG 60
MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG
Sbjct: 1 MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG 60
Query: 61 KPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTP 120
KPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTP
Sbjct: 61 KPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTP 120
Query: 121 LTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQN 180
LTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQN
Sbjct: 121 LTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQN 180
Query: 181 SCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYFRSGKMCLGEEACLKSGNDMK 240
SCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYFRSGKMCLGEEACLKSGNDMK
Sbjct: 181 SCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYFRSGKMCLGEEACLKSGNDMK 240
Query: 241 RDVSNTSSWASNRESFFSLVKLLKGF 266
RDVSNTSSWASNRESFFSLVKLLKGF
Sbjct: 241 RDVSNTSSWASNRESFFSLVKLLKGF 266
>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
sapiens]
Length = 1235
Score = 441 bits (1134), Expect = e-124
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG 60
MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG
Sbjct: 1 MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG 60
Query: 61 KPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTP 120
KPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTP
Sbjct: 61 KPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTP 120
Query: 121 LTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQN 180
LTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQN
Sbjct: 121 LTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQN 180
Query: 181 SCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYF 220
SCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYF
Sbjct: 181 SCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYF 220
>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
sapiens]
Length = 1259
Score = 441 bits (1134), Expect = e-124
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG 60
MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG
Sbjct: 1 MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG 60
Query: 61 KPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTP 120
KPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTP
Sbjct: 61 KPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTP 120
Query: 121 LTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQN 180
LTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQN
Sbjct: 121 LTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQN 180
Query: 181 SCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYF 220
SCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYF
Sbjct: 181 SCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYF 220
>gi|217416343 fibrosin-like 1 [Homo sapiens]
Length = 1045
Score = 117 bits (294), Expect = 8e-27
Identities = 90/238 (37%), Positives = 115/238 (48%), Gaps = 22/238 (9%)
Query: 10 LRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPP---SSA 66
+R RRSR+QRDR RR A A ++G G PP + A
Sbjct: 5 VRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGL----RGAPPRGAAPA 60
Query: 67 PSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPLTKKKR 126
P RPPRR+RRES+S EE++IDGFA+ SF T EALEKD+ALKP ER EK + L KK R
Sbjct: 61 PRTARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERKEKWERRLIKKPR 120
Query: 127 EALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQNSCRDSD 186
E+ T + S+ R P S ++ C K P ++ + RDSD
Sbjct: 121 ESETCPPAEPSENRR---PLEAGSPGQDLEPACDGARKVPLQPSKQMKVTVSKGGDRDSD 177
Query: 187 SESASGESKGFHRSSSRERLSDSSAPSSLGTGY---FRSG---KMCLGEEACLKSGND 238
+S +SSR+ LSDSSA + G GY SG K +G E G D
Sbjct: 178 DDSV------LEATSSRDPLSDSSAHAVSGRGYSCDSESGPDDKASVGSEKLFAPGTD 229
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 52.4 bits (124), Expect = 4e-07
Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 10/215 (4%)
Query: 3 GPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLA----SSSGSDKED 58
G + H +KK + S+ R+ ++ + A G + R SS+ +D E
Sbjct: 670 GKSHRHKKKKKHKKSSKHKRKHKADTEEKSSKAESGEKSKKRKKRKRKKNKSSAPADSER 729
Query: 59 NGKPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQ 118
KP P PPRR+RR ++ + +S E + R K +
Sbjct: 730 GPKPEPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGSSGKKDEGGGGSSSQDHGGRKHKGE 789
Query: 119 TPLTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPG 178
P + +R A T + SR SH SS E+ + H +K + + +
Sbjct: 790 LPPSSCQRRAGT------KRSSRSSHRSQPSSGDEDSDDASSHRLHQKSPSQYSEEEEEE 843
Query: 179 QNSCRDSDSESASGESKGFHRSSSRERLSDSSAPS 213
+ S S S SG HRSS R S S A S
Sbjct: 844 DSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASS 878
Score = 29.3 bits (64), Expect = 3.7
Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 21/228 (9%)
Query: 8 HGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRT------RALSLASSSGSD-----K 56
H L +K S+ + E G + + G + R+ S +S + SD +
Sbjct: 826 HRLHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCYSR 885
Query: 57 EDNGKPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEK 116
+ + S + R R +R S + D + + + + D +L + +
Sbjct: 886 QRSYSDDSYSDYSDRSRRHSKRSHDSDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSR 945
Query: 117 RQTPLTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLK 176
++ ++ R + G S S SR S + R+ H +R + R
Sbjct: 946 SRSHTRERSR---SRGRSRSSSCSR-------SRSKRRSRSTTAHSWQRSRSYSRDRSRS 995
Query: 177 PGQNSCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYFRSGK 224
S R + + G R S R S S YFRSG+
Sbjct: 996 TRSPSQRSGSRKRSWGHESPEERHSGRRDFIRSKIYRSQSPHYFRSGR 1043
Score = 28.9 bits (63), Expect = 4.9
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 117 RQTPLTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLK 176
+Q P E G S SKK R H + K+KK K+ + +
Sbjct: 644 KQEPGGSHGSETEDTGRSLPSKKERSGKSHRHK--------------KKKKHKKSSKHKR 689
Query: 177 PGQNSCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTG 218
+ + S++ SGE K R + + + SSAP+ G
Sbjct: 690 KHKADTEEKSSKAESGE-KSKKRKKRKRKKNKSSAPADSERG 730
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 43.5 bits (101), Expect = 2e-04
Identities = 71/315 (22%), Positives = 117/315 (37%), Gaps = 61/315 (19%)
Query: 3 GPTRGHGLRKKRRS-RSQRDRERRSRGGL-------GAGAAGGGGA-------------- 40
G R G +K+RR R+ ++ E+R L G GA+ GGG
Sbjct: 95 GKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQSE 154
Query: 41 -----GRTRALSLASSSGSDKEDNGKPPSSAPSR------PRPPRRKRRESTS------A 83
G A + A+++G G P SS+ ++ R PRR RR S+
Sbjct: 155 QGLLLGGASAATAATAAGGTGGSGGSPASSSGTQRRGEGSERRPRRDRRSSSGRSKERHR 214
Query: 84 EEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPLTK--KKREALTNGLSFHSKKSR 141
E DG S + + + + V K + + +++ A S S+K R
Sbjct: 215 EHRRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDR 274
Query: 142 LSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQNSCRDSDSESASG---ESKGFH 198
S H R ++ + K+ PKA R+ K + R S S G +S H
Sbjct: 275 DSKAH-----RSRTKSSKEPPSAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPVSH 329
Query: 199 RSSSRERLSDSSAPSSLGTG------------YFRSGKMCLGEEACLKSGNDMKRDVSNT 246
R+S R S +P+ G+ Y R + + G D+ ++
Sbjct: 330 RASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSS 389
Query: 247 SSWASNRESFFSLVK 261
SSW +R + +++
Sbjct: 390 SSWRRSRSPYSPVLR 404
Score = 40.0 bits (92), Expect = 0.002
Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 13/222 (5%)
Query: 6 RGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSS 65
RG K RSR E R+ ++ GG ++ + + +SSS D+ S
Sbjct: 223 RGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSR 282
Query: 66 APSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEAL----EKDVALKPQERVEKRQTPL 121
S PP + + ED + A + L + V+ + + + R++P
Sbjct: 283 TKSSKEPPSAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPVSHRASQSLRSRKSPS 342
Query: 122 -----TKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLG---KRKKMPKALR 173
+ L S +S++ S+ H S +R D + + +R + P +
Sbjct: 343 PAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPV 402
Query: 174 QLKPGQNSCRDSDSESASGESKGFHRSSSRERLSDSSAPSSL 215
+ G++ R S S S+ HR S S +PS+L
Sbjct: 403 LRRSGKSRSR-SPYSSRHSRSRSRHRLSRSRSRHSSISPSTL 443
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 43.5 bits (101), Expect = 2e-04
Identities = 71/315 (22%), Positives = 117/315 (37%), Gaps = 61/315 (19%)
Query: 3 GPTRGHGLRKKRRS-RSQRDRERRSRGGL-------GAGAAGGGGA-------------- 40
G R G +K+RR R+ ++ E+R L G GA+ GGG
Sbjct: 95 GKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQSE 154
Query: 41 -----GRTRALSLASSSGSDKEDNGKPPSSAPSR------PRPPRRKRRESTS------A 83
G A + A+++G G P SS+ ++ R PRR RR S+
Sbjct: 155 QGLLLGGASAATAATAAGGTGGSGGSPASSSGTQRRGEGSERRPRRDRRSSSGRSKERHR 214
Query: 84 EEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPLTK--KKREALTNGLSFHSKKSR 141
E DG S + + + + V K + + +++ A S S+K R
Sbjct: 215 EHRRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDR 274
Query: 142 LSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQNSCRDSDSESASG---ESKGFH 198
S H R ++ + K+ PKA R+ K + R S S G +S H
Sbjct: 275 DSKAH-----RSRTKSSKEPPSAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPVSH 329
Query: 199 RSSSRERLSDSSAPSSLGTG------------YFRSGKMCLGEEACLKSGNDMKRDVSNT 246
R+S R S +P+ G+ Y R + + G D+ ++
Sbjct: 330 RASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSS 389
Query: 247 SSWASNRESFFSLVK 261
SSW +R + +++
Sbjct: 390 SSWRRSRSPYSPVLR 404
Score = 40.0 bits (92), Expect = 0.002
Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 13/222 (5%)
Query: 6 RGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSS 65
RG K RSR E R+ ++ GG ++ + + +SSS D+ S
Sbjct: 223 RGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSR 282
Query: 66 APSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEAL----EKDVALKPQERVEKRQTPL 121
S PP + + ED + A + L + V+ + + + R++P
Sbjct: 283 TKSSKEPPSAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPVSHRASQSLRSRKSPS 342
Query: 122 -----TKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLG---KRKKMPKALR 173
+ L S +S++ S+ H S +R D + + +R + P +
Sbjct: 343 PAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPV 402
Query: 174 QLKPGQNSCRDSDSESASGESKGFHRSSSRERLSDSSAPSSL 215
+ G++ R S S S+ HR S S +PS+L
Sbjct: 403 LRRSGKSRSR-SPYSSRHSRSRSRHRLSRSRSRHSSISPSTL 443
>gi|34452713 Ca2+-dependent secretion activator isoform 2 [Homo
sapiens]
Length = 1314
Score = 42.0 bits (97), Expect = 6e-04
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 29 GLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRRESTSAEED-- 86
G G GA GGGG+G + S + G+P S +PS ++ E EE+
Sbjct: 56 GAGVGAGGGGGSGASSGGGAGGLQPSSRAGGGRPSSPSPSVVSEKEKEELERLQKEEEER 115
Query: 87 ----IIDGFAMTSFV-TFEALEKDVALKPQERVEKRQTPLTKKKREALTNG 132
+ F M F A + + Q+++ K+Q K + +A NG
Sbjct: 116 KKRLQLYVFVMRCIAYPFNAKQPTDMARRQQKISKQQLQTVKDRFQAFLNG 166
>gi|34452715 Ca2+-dependent secretion activator isoform 1 [Homo
sapiens]
Length = 1353
Score = 42.0 bits (97), Expect = 6e-04
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 29 GLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRRESTSAEED-- 86
G G GA GGGG+G + S + G+P S +PS ++ E EE+
Sbjct: 56 GAGVGAGGGGGSGASSGGGAGGLQPSSRAGGGRPSSPSPSVVSEKEKEELERLQKEEEER 115
Query: 87 ----IIDGFAMTSFV-TFEALEKDVALKPQERVEKRQTPLTKKKREALTNG 132
+ F M F A + + Q+++ K+Q K + +A NG
Sbjct: 116 KKRLQLYVFVMRCIAYPFNAKQPTDMARRQQKISKQQLQTVKDRFQAFLNG 166
>gi|34452711 Ca2+-dependent secretion activator isoform 3 [Homo
sapiens]
Length = 1274
Score = 42.0 bits (97), Expect = 6e-04
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 29 GLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRRESTSAEED-- 86
G G GA GGGG+G + S + G+P S +PS ++ E EE+
Sbjct: 56 GAGVGAGGGGGSGASSGGGAGGLQPSSRAGGGRPSSPSPSVVSEKEKEELERLQKEEEER 115
Query: 87 ----IIDGFAMTSFV-TFEALEKDVALKPQERVEKRQTPLTKKKREALTNG 132
+ F M F A + + Q+++ K+Q K + +A NG
Sbjct: 116 KKRLQLYVFVMRCIAYPFNAKQPTDMARRQQKISKQQLQTVKDRFQAFLNG 166
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 41.2 bits (95), Expect = 0.001
Identities = 65/263 (24%), Positives = 98/263 (37%), Gaps = 52/263 (19%)
Query: 6 RGHGLRKKRRSRSQRDRERRSRGGLGAGAAG--------------GGGAGRTRALSLA-- 49
R G ++ RSR +R R RRS A ++ GGG+ + + S +
Sbjct: 592 RRRGGSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRG 651
Query: 50 ---SSSGSDKED-NGKPPSSAPSRPRPPRRKRRESTSAEEDIIDG--FAMTSFVTFEALE 103
S GS+K PPS + S R+R + +D+ D FA+ +T L+
Sbjct: 652 EKRSGDGSEKAPAPAPPPSGSTSCGDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLD 711
Query: 104 KDVALKPQERVEKRQTPLTKKKREAL--TNGLSFHSKKSRLSHPHHYSSDRENDRNLCQH 161
K P P + KRE L + GLS + + S S + + +
Sbjct: 712 KSDPRGPS------PAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSRE 765
Query: 162 LGKRKKMPKALRQLKPGQNSCRDSDSESASGESKGFHRSSSRERLSDSSAPS-------- 213
G R+K G + RD D + + RSS + R SAPS
Sbjct: 766 KGSRRK-------ALDGGDRDRDRDRD------RDRDRSSKKARPPKESAPSSGPPPKPP 812
Query: 214 -SLGTGYFRSGKMCLGEEACLKS 235
S G+G S C + L+S
Sbjct: 813 VSSGSGSSSSSSSCSSRKVKLQS 835
Score = 29.3 bits (64), Expect = 3.7
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 28/134 (20%)
Query: 13 KRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSG---------SDKEDNGKPP 63
K +++ + R++ GG G+ G +++A S + ++G S +E K P
Sbjct: 915 KGKTKPSKTRKKVRSGGGSGGSGGQVSLKKSKADSCSQAAGTKGAEETSWSGEERAAKVP 974
Query: 64 SSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTF---------------EALEKDVAL 108
S+ P + PP + + + +D T V+F E E++
Sbjct: 975 STPPPKAAPP----PPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGGAEEEEEEEEE 1030
Query: 109 KPQERVEKRQTPLT 122
+ +E E+ Q P T
Sbjct: 1031 EEEEEEEEEQQPAT 1044
Score = 28.5 bits (62), Expect = 6.4
Identities = 35/132 (26%), Positives = 45/132 (34%), Gaps = 18/132 (13%)
Query: 36 GGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRRESTSAEE-DIIDGFAMT 94
G GG A S ASSS S P SS+PS P PP + A DI D F T
Sbjct: 180 GDGGPAPPPAPSSASSSPSP-----SPSSSSPSPPPPPPPPAPPAPPAPRFDIYDPFHPT 234
Query: 95 SFVTFEALEKDVALKPQERVEKRQTPL--TKKKREALTNGLSFHSKKSRLSHPHHYSSDR 152
D A P E++ P T + S ++ D
Sbjct: 235 ----------DEAYSPPPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDE 284
Query: 153 ENDRNLCQHLGK 164
E + L Q + +
Sbjct: 285 EEEEGLSQSISR 296
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 40.4 bits (93), Expect = 0.002
Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 27/223 (12%)
Query: 11 RKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSL--------ASSSGS-----DKE 57
RK+R +R+ R S G G+G++ G + R+R+LS+ A+SS S D E
Sbjct: 670 RKERPARTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSE 729
Query: 58 DN----GKPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQER 113
D P SSA SR P + R+E ++++ DG + + + KP
Sbjct: 730 DMYADLASPVSSASSRSPAPAQTRKEKGKSKKE--DGVKEEKRKRDSSTQPPKSAKPPAG 787
Query: 114 VEKRQTPLTKKKRE--ALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKA 171
+ Q P T ++ G K+ +L+ + ++D+ + + R+ P A
Sbjct: 788 GKSSQQPSTPQQAPPGQPQQGTFVAHKEIKLTLLNK-AADKGSRKRYEPSDKDRQSPPPA 846
Query: 172 LRQLKPGQNSCRDSDSESASGESKGFHRSSSRERLSDSSAPSS 214
R RD S G K R+R +S AP++
Sbjct: 847 KRPNTSPDRGSRDRKSGGRLGSPK-----PERQRGQNSKAPAA 884
Score = 28.9 bits (63), Expect = 4.9
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 11 RKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRP 70
R+++ S S SR + + G G+ R+R+ S + SS S + S + SR
Sbjct: 540 RRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRS 599
Query: 71 R 71
R
Sbjct: 600 R 600
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 40.0 bits (92), Expect = 0.002
Identities = 55/285 (19%), Positives = 102/285 (35%), Gaps = 39/285 (13%)
Query: 4 PTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPP 63
P + + ++ +++++ RSR G ++ G + +R S +S+ S +
Sbjct: 486 PNETTSVLEPKKEHKEKEKQGRSRSG---SSSSGSSSSNSRTSSTSSTVSSSSYSSSSGS 542
Query: 64 SSAPSRPRPPRRKRRESTSAEEDI----IDGFAMTSFVTFEALEKDVALKPQERVEKRQT 119
S SR P+RK+R S S I + + + E+ V ++ + R +
Sbjct: 543 SRTSSRSSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSI 602
Query: 120 PLTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDR--------NLCQHLGKRKKMPKA 171
+++ + + +SR + S R DR NL + K K K
Sbjct: 603 ERERRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKE 662
Query: 172 LRQLKPGQNSC--------------RDSDSESASGESKGFHRSSSRERLSDSSAPSSLGT 217
+ K S +D E E K F SS +RL
Sbjct: 663 QERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERT-- 720
Query: 218 GYFRSGKMCL-------GEEACLKSGNDMKRDVSNTSSWASNRES 255
+ RSG + + +++ + D K+ + SS S+ ES
Sbjct: 721 -FSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSES 764
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 40.0 bits (92), Expect = 0.002
Identities = 55/285 (19%), Positives = 102/285 (35%), Gaps = 39/285 (13%)
Query: 4 PTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPP 63
P + + ++ +++++ RSR G ++ G + +R S +S+ S +
Sbjct: 486 PNETTSVLEPKKEHKEKEKQGRSRSG---SSSSGSSSSNSRTSSTSSTVSSSSYSSSSGS 542
Query: 64 SSAPSRPRPPRRKRRESTSAEEDI----IDGFAMTSFVTFEALEKDVALKPQERVEKRQT 119
S SR P+RK+R S S I + + + E+ V ++ + R +
Sbjct: 543 SRTSSRSSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSI 602
Query: 120 PLTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDR--------NLCQHLGKRKKMPKA 171
+++ + + +SR + S R DR NL + K K K
Sbjct: 603 ERERRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKE 662
Query: 172 LRQLKPGQNSC--------------RDSDSESASGESKGFHRSSSRERLSDSSAPSSLGT 217
+ K S +D E E K F SS +RL
Sbjct: 663 QERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERT-- 720
Query: 218 GYFRSGKMCL-------GEEACLKSGNDMKRDVSNTSSWASNRES 255
+ RSG + + +++ + D K+ + SS S+ ES
Sbjct: 721 -FSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSES 764
>gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [Homo
sapiens]
Length = 167
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/38 (63%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 11 RKKRRSRSQRDRERRS----RGGLGAGAAGGGGAGRTR 44
RKK RSRS R RERRS RG G G GGGG GR R
Sbjct: 117 RKKHRSRS-RSRERRSRSRDRGRGGGGGGGGGGGGRER 153
>gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [Homo
sapiens]
Length = 240
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/38 (63%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 11 RKKRRSRSQRDRERRS----RGGLGAGAAGGGGAGRTR 44
RKK RSRS R RERRS RG G G GGGG GR R
Sbjct: 190 RKKHRSRS-RSRERRSRSRDRGRGGGGGGGGGGGGRER 226
>gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Homo
sapiens]
Length = 240
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/38 (63%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 11 RKKRRSRSQRDRERRS----RGGLGAGAAGGGGAGRTR 44
RKK RSRS R RERRS RG G G GGGG GR R
Sbjct: 190 RKKHRSRS-RSRERRSRSRDRGRGGGGGGGGGGGGRER 226
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 39.7 bits (91), Expect = 0.003
Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 35/237 (14%)
Query: 1 MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG 60
M+G + +R SQ D + S G G+G++ G + + + S +S S S E
Sbjct: 1 MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS 60
Query: 61 KPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAM-TSFVTFEALEKDVALKPQERVEKRQT 119
+ S + + R A+ +DG S + A+++ LK Q++ +++Q
Sbjct: 61 QSESESDT-------SRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQ 113
Query: 120 PLTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQ 179
H S SS ++D + + KRKK Q+ G
Sbjct: 114 ----------------HQASSNSGSEEDSSSSEDSDDSSSE--VKRKKHKDEDWQMS-GS 154
Query: 180 NSCRDSDSESASGESKGFHRSSSRERLSDSSAPSSL------GTGYFRSGKMCLGEE 230
S S S+S S E + +SS E SD + + ++GK LG++
Sbjct: 155 GSPSQSGSDSESEEER--EKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQK 209
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 39.3 bits (90), Expect = 0.004
Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 15/245 (6%)
Query: 11 RKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRP 70
R + RSRS++++ R + G R+++ A + ++ GKP S +PSR
Sbjct: 235 RSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRH 294
Query: 71 RPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPLTKKKREALT 130
+ + R S +E ++ S + EK + Q R R ++ + + +
Sbjct: 295 KSKSKSRSRS---QERRVEEEKRGSVSRGRSQEKSLR---QSRSRSRSKGGSRSRSRSRS 348
Query: 131 NGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQNSCRDSDSESA 190
SK R R R+ + RK+ K R K G + + +
Sbjct: 349 K-----SKDKRKGRKRSREESRSRSRSRSKSERSRKRGSK--RDSKAGSSKKKKKEDTDR 401
Query: 191 SGESKGFHRSSSRERLSDSSAPSSLGTGYFRSGKMCLGEEACLKSGNDMKRDVSNTSSWA 250
S +S+ RS S+ER + + SS G S +E +S ++ K + S
Sbjct: 402 S-QSRSPSRSVSKER-EHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESR 459
Query: 251 SNRES 255
S +S
Sbjct: 460 SRSKS 464
Score = 35.4 bits (80), Expect = 0.052
Identities = 54/245 (22%), Positives = 87/245 (35%), Gaps = 17/245 (6%)
Query: 11 RKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRP 70
R++ SRS+ RSR + G+ ++ S S S K S + SR
Sbjct: 181 RRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRS 240
Query: 71 RPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPLTKKKREALT 130
R + K R + + A S + KD A +E+++ K R
Sbjct: 241 RSKKEKSRSPSKEKSRSRSHSAGKS----RSKSKDQA---EEKIQNNDNVGKPKSRSP-- 291
Query: 131 NGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQNSCRDSDSESA 190
S H KS+ S +R + + + + K+LRQ + S S S S
Sbjct: 292 ---SRHKSKSK---SRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSR 345
Query: 191 SGESKGFHRSSSRERLSDSSAPSSLGTGYFRSGKMCLGEEACLKSGNDMKRDVSNTSSWA 250
S R + +S + S + RS K G + K+G+ K+ +T
Sbjct: 346 SRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKR--GSKRDSKAGSSKKKKKEDTDRSQ 403
Query: 251 SNRES 255
S S
Sbjct: 404 SRSPS 408
Score = 33.1 bits (74), Expect = 0.26
Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 27/212 (12%)
Query: 12 KKRRSR------------SQRDRERRSRGGLGAGA-------AGGGGAGRTRALSLASSS 52
++RRS S+ R+ RSR G + + G R+++ S + S
Sbjct: 180 RRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSR 239
Query: 53 GSDKEDNGKPPSSAPSRPRPPRRKRRESTS---AEEDIIDGFAMTSFVTFEALEKDVALK 109
K++ + PS SR R + S S AEE I + + + K
Sbjct: 240 SRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSK 299
Query: 110 PQERVEKRQTPLTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMP 169
+ R ++R+ + ++KR +++ G S++ L S + R+ + K K
Sbjct: 300 SRSRSQERR--VEEEKRGSVSRG---RSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKR 354
Query: 170 KALRQLKPGQNSCRDSDSESASGESKGFHRSS 201
K ++ + S S S+S +G R S
Sbjct: 355 KGRKRSREESRSRSRSRSKSERSRKRGSKRDS 386
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 39.3 bits (90), Expect = 0.004
Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 16/174 (9%)
Query: 31 GAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRRESTSAEEDIIDG 90
G G AGG G A A SG + G P + PPR +
Sbjct: 24 GPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLAEPPGSAGP 83
Query: 91 FAMTSFVTFEA--LEKDVALKPQERVEKRQTPLTKKKREALTNGLSFHSKKSRLSHPHHY 148
A + V A +E +A P+ R T +++ A + LS +Y
Sbjct: 84 QAGPTVVPGSATPMETGIAETPEGR-------RTSRRKRAKVEYREMDESLANLSEDEYY 136
Query: 149 SSDRENDRNLCQHLGKRKKMPKALRQLKPGQNSCRDSDSESASGESKGFHRSSS 202
S + N + K KK+P Q P + + +S+ E SG++ G SS
Sbjct: 137 SEEERNAK-----AEKEKKLPPPPPQAPPEEEN--ESEPEEPSGQAGGLQDDSS 183
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 38.9 bits (89), Expect = 0.005
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 3 GPTRGHGLRKKRRSRSQRDRER---RSRGGLGAGAA---GGGGAGRTRALSLASSSGSDK 56
G +RG G K R S + R +SR G A A+ GGGGA R R S SG
Sbjct: 721 GKSRGGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKA 780
Query: 57 EDNGKPPSSAPSRPRPPRRKRR 78
G ++A +PPR K R
Sbjct: 781 VTAGGQKAAAAGGKKPPRVKSR 802
Score = 32.0 bits (71), Expect = 0.58
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 17 RSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRK 76
R ++ R +SRGG GA + G GGA + SG K +GK +++ S ++
Sbjct: 714 RGKKPRLGKSRGGGGAKSRGSGGA-------KSRGSGGAKSRSGKKAAASKSHGGGGAKR 766
Query: 77 RR----ESTSAEEDIIDG 90
RR +S S E+ + G
Sbjct: 767 RRGGGAKSRSGEKAVTAG 784
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 6 RGHGLRKKRRS--RSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPP 63
RG G +K RR ++ + R +SR G G G R +A + S DK+ +
Sbjct: 420 RGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKA 479
Query: 64 SSAPSRPR 71
S+A ++ R
Sbjct: 480 SAAGTKSR 487
Score = 29.3 bits (64), Expect = 3.7
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 7 GHGLRKKRRSR------SQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNG 60
G G + +RR + S++ R R + G GA + A + S G +K
Sbjct: 118 GRGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKA 177
Query: 61 KPPSSAPSRPRPPRRKRRESTSAEE 85
+ + PRR+ +S E+
Sbjct: 178 AAAGAKSRSGKKPRRRGAKSRGDED 202
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 37.0 bits (84), Expect = 0.018
Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 17/184 (9%)
Query: 31 GAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRRESTSAEEDIIDG 90
G G AGG G A A SG + G P + PPR +
Sbjct: 24 GPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLAEPPGSAGP 83
Query: 91 FAMTSFVTFEA--LEKDVALKPQERVEKRQTPLTKKKREALTNGLSFHSKKSRLSHPHHY 148
A + V A +E +A P+ R T +++ A + LS +Y
Sbjct: 84 QAGPTVVPGSATPMETGIAETPEGR-------RTSRRKRAKVEYREMDESLANLSEDEYY 136
Query: 149 SSDRENDRNLCQHLGKRKKMPKALRQLKPGQNSCRDSDSESASG-ESKGFHRSSSRERLS 207
S + N + K KK+P Q P + + +S+ E SG E F +R++
Sbjct: 137 SEEERNAK-----AEKEKKLPPPPPQAPPEEEN--ESEPEEPSGVEGAAFQSRLPHDRMT 189
Query: 208 DSSA 211
A
Sbjct: 190 SQEA 193
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 37.0 bits (84), Expect = 0.018
Identities = 52/197 (26%), Positives = 75/197 (38%), Gaps = 28/197 (14%)
Query: 24 RRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRRESTSA 83
RR R G G+ GGG +R +SG DK PP R R S
Sbjct: 74 RRDRDGYSYGSRSGGGGYSSRR-----TSGRDKYG---PPVRTEYRLIVENLSSRCSW-- 123
Query: 84 EEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPLTKKKREALTNGLSFHSK----- 138
+D+ D VT+ K+ + E V + ++ K+ +G + +
Sbjct: 124 -QDLKDFMRQAGEVTYADAHKE---RTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLI 179
Query: 139 --KSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQNSCRDSDSESASGESKG 196
K R SH YS R R+ +R+ ++ R + S S S S S SKG
Sbjct: 180 EDKPRTSHRRSYSGSRSRSRS------RRRSRSRSRRSSRSRSRSISKSRSRSRS-RSKG 232
Query: 197 FHRSSSRERLSDSSAPS 213
RS S+ R S S + S
Sbjct: 233 RSRSRSKGRKSRSKSKS 249
Score = 30.4 bits (67), Expect = 1.7
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 4 PTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPP 63
P G RSRS +D +SR + + G G ++ S + S PP
Sbjct: 251 PKSDRGSHSHSRSRS-KDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSNSPLPVPP 309
Query: 64 SSAPSRPRPPRRKRRESTS 82
S A S PP+R S S
Sbjct: 310 SKARSVSPPPKRATSRSRS 328
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 11 RKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRP 70
R +RRSRS+ R RSR + R+R+ S + + K S + S+P
Sbjct: 199 RSRRRSRSRSRRSSRSR-------SRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKP 251
Query: 71 RPPRRKRRESTSAEED 86
+ R S S +D
Sbjct: 252 KSDRGSHSHSRSRSKD 267
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 37.0 bits (84), Expect = 0.018
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 10 LRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKP-PSSAPS 68
LRK++R + R +R+ AG G G G AS D E+ +P PS PS
Sbjct: 85 LRKEKRHLRKARRLQRT-----AGPEQGPGLGGRSGAEEASGHRQDTEERARPAPSRDPS 139
Query: 69 RPRPPR--RKRRESTSAEEDIIDGFAMTSFVTFEAL-----EKDVALKPQER---VEKRQ 118
PR PR R + ++T+A A T+ AL E+D ++ ER + KR
Sbjct: 140 PPRKPRPSRVKAKATAATAKTRPSAAATAAARKRALLAANEEEDREIRKLERCLGLNKR- 198
Query: 119 TPLTKKKREALTNGLSF 135
KKK + + LSF
Sbjct: 199 ----KKKDGSSSVPLSF 211
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.0 bits (84), Expect = 0.018
Identities = 58/214 (27%), Positives = 78/214 (36%), Gaps = 37/214 (17%)
Query: 13 KRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAP----- 67
+RRSRS+ R R A G RT A S S + +G+ S P
Sbjct: 632 RRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGR 691
Query: 68 SRPRPPRRKRRESTS--------AEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQT 119
SR R PRR R S S + G + +S + K+ + Q R +
Sbjct: 692 SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSS-----SERKNKSRTSQRRSRSNSS 746
Query: 120 PLTKKKREALTNGLSFHSKKSR-LSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPG 178
P KK R S++SR LS P + R +L + L PK Q P
Sbjct: 747 PEMKKSR--------ISSRRSRSLSSPRSKAKSR---LSLRRSLSGSSPCPKQKSQTPPR 795
Query: 179 QNSCRDSDSESASGESKGFHRSSSRERLSDSSAP 212
+ S S S + K R+ R S SS P
Sbjct: 796 R-------SRSGSSQPKAKSRTPPRRSRSSSSPP 822
Score = 36.2 bits (82), Expect = 0.031
Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 33/205 (16%)
Query: 14 RRSRSQ-----RDRERRS-RGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPP---- 63
RRSRS +D+ R + R G+ ++ A RAL S SGS + G P
Sbjct: 1594 RRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSS 1653
Query: 64 --SSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTP- 120
S+P P R RR S S+ E K + P R R +P
Sbjct: 1654 STESSPEHPPKSRTARRGSRSSPE-----------------PKTKSRTPPRRRSSRSSPE 1696
Query: 121 LTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQN 180
LT+K R + + + S ++R P + R + ++ + + R +
Sbjct: 1697 LTRKARLSRRSRSASSSPETRSRTPPRH---RRSPSVSSPEPAEKSRSSRRRRSASSPRT 1753
Query: 181 SCRDSDSESASGESKGFHRSSSRER 205
S S + +G RS SR R
Sbjct: 1754 KTTSRRGRSPSPKPRGLQRSRSRSR 1778
Score = 35.0 bits (79), Expect = 0.068
Identities = 49/228 (21%), Positives = 74/228 (32%), Gaps = 38/228 (16%)
Query: 20 RDRERRSRGGLGAGAAGGGGAGRTRALSLAS----------SSGSDKEDNGKPPSSAPSR 69
R RRSR G G G G +LS +S S G + D+ P + P
Sbjct: 1433 RTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQT 1492
Query: 70 PRPPRRK-------------RRESTSAEEDIIDGFAMTSFV-------TFEALEKDVALK 109
PRP R +RE + +E + + + + + L+ +
Sbjct: 1493 PRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSAS 1552
Query: 110 PQERVEKRQTPLTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMP 169
PQER E +P +K K S + S R + + K + P
Sbjct: 1553 PQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAP 1612
Query: 170 KALRQLKPGQNSCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGT 217
+A S DS E + + R S S PS G+
Sbjct: 1613 RA--------QSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGS 1652
Score = 31.2 bits (69), Expect = 0.98
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 17/93 (18%)
Query: 11 RKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLAS------------SSGSDKED 58
RK+ RS + + RR+ A +A R+R+ S A+ S S +
Sbjct: 245 RKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRG 304
Query: 59 NGKPPSSAP-----SRPRPPRRKRRESTSAEED 86
G P S P RP P ++ +S ED
Sbjct: 305 EGDAPFSEPGTTSTQRPSSPETATKQPSSPYED 337
Score = 30.8 bits (68), Expect = 1.3
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Query: 104 KDVALKPQERVEKRQTPLTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLG 163
K +L + + TP KKK++ G S R SS ++ R+ +
Sbjct: 169 KPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPR--RERKKSSKKKKHRSESESKK 226
Query: 164 KRKKMPKALRQLKPGQNSCRDSDSESASGESKGFHRSSSRERLSDSSAPSS 214
++ + P + K + S S + + +S+ HRS+S + S S S
Sbjct: 227 RKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRS 277
Score = 30.8 bits (68), Expect = 1.3
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 11 RKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSA---P 67
RK+R S S S + ++ + + + S +SSS S KP A P
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKP 2662
Query: 68 SRPRPPRRKRRESTSAEEDI 87
+ P+ P R S S + I
Sbjct: 2663 ASPKKPPPGERRSRSPRKPI 2682
Score = 30.4 bits (67), Expect = 1.7
Identities = 59/267 (22%), Positives = 90/267 (33%), Gaps = 32/267 (11%)
Query: 6 RGHGLRKKRRSRS-QRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKE------- 57
R +++ RSRS QR RSR G + GR+ + S A+ S
Sbjct: 524 RSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGR 583
Query: 58 DNGKPPSSAPSRPRPP-RRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEK 116
+ P+ SR R P RR+ R T A S A + P R +
Sbjct: 584 SRSRTPARRRSRSRTPTRRRSRSRTPARRG-------RSRSRTPARRRSRTRSPVRRRSR 636
Query: 117 RQTPLTKKKREALTNGLSFHSKKSRL--------SHPHHYSSDRENDRNLCQHLGKRKKM 168
++P + R +SR S S R R + R +
Sbjct: 637 SRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRT 696
Query: 169 PKALRQ-----LKPGQNSCRDSDSESASG---ESKGFHRSSSRERLSDSSAPSSLGTGYF 220
P+ R ++ G++ R SG E K R+S R S+SS
Sbjct: 697 PRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISS 756
Query: 221 RSGKMCLGEEACLKSGNDMKRDVSNTS 247
R + + KS ++R +S +S
Sbjct: 757 RRSRSLSSPRSKAKSRLSLRRSLSGSS 783
Score = 30.4 bits (67), Expect = 1.7
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 11 RKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRP 70
R+++RSRS+ RR RGG G + +R S S + S + + P
Sbjct: 1799 RRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSP 1858
Query: 71 RPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPLTKKKREALT 130
P +R R ++ A T L + R R +P+++++ + T
Sbjct: 1859 APWKRSRSRASPA--------------THRRSRSRTPLISRRRSRSRTSPVSRRRSRSRT 1904
Query: 131 N 131
+
Sbjct: 1905 S 1905
Score = 30.0 bits (66), Expect = 2.2
Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 8/133 (6%)
Query: 12 KKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPR 71
++ RSR+ RRSR R R+ S S + P S SR R
Sbjct: 1874 RRSRSRTPLISRRRSRSRTSP-------VSRRRSRSRTSVTRRRSRSRASPVSRRRSRSR 1926
Query: 72 -PPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPLTKKKREALT 130
PP +RR + + T VT + R R +P+T+++ + T
Sbjct: 1927 TPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRT 1986
Query: 131 NGLSFHSKKSRLS 143
+ ++ +SR S
Sbjct: 1987 SPVTRRRSRSRTS 1999
Score = 30.0 bits (66), Expect = 2.2
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 167 KMPKALRQLKPGQNSCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGT 217
+ P AL L+P + S S S+S S SSS S SS+ S G+
Sbjct: 2516 QQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGS 2566
Score = 28.9 bits (63), Expect = 4.9
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 11 RKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPP-SSAPSR 69
R++ RSR+ RRSR R R+ S AS + + PP + SR
Sbjct: 1885 RRRSRSRTSPVSRRRSRSRTSVT--------RRRSRSRASPVSRRRSRSRTPPVTRRRSR 1936
Query: 70 PRPPRRKRRE-STSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPLTKKKREA 128
R P +RR S + + T VT + + R R +P+T+++ +
Sbjct: 1937 SRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRS 1996
Query: 129 LTNGLSFHSKKSRLS 143
T+ ++ +SR S
Sbjct: 1997 RTSPVTRRRSRSRTS 2011
Score = 28.9 bits (63), Expect = 4.9
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 22/87 (25%)
Query: 19 QRDRERRSRGGLGAGAAGGGGAGRTRALSLAS-SSGSDKEDNGKP------------PSS 65
Q +ERRS + ++ + + + S +S SS SD E + P P+
Sbjct: 2525 QPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTP 2584
Query: 66 APSR---------PRPPRRKRRESTSA 83
AP P P +RKRR S+S+
Sbjct: 2585 APKEAVREGRPPEPTPAKRKRRSSSSS 2611
Score = 28.9 bits (63), Expect = 4.9
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 11 RKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDN-------GKPP 63
++KRRS S S + ++ + + + S +SSS S + P
Sbjct: 2602 KRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPK 2661
Query: 64 SSAPSRPRPPRRKRRESTSAEEDIIDGFAMT 94
++P +P P R+ R + + D +++
Sbjct: 2662 PASPKKPPPGERRSRSPRKPIDSLRDSRSLS 2692
Score = 28.1 bits (61), Expect = 8.3
Identities = 53/226 (23%), Positives = 76/226 (33%), Gaps = 38/226 (16%)
Query: 42 RTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEA 101
RT + S S + + PP +PSR P+ K + S + G + S
Sbjct: 884 RTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPS------ 937
Query: 102 LEKDVALKPQERVEKRQTPLTKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNL--- 158
RV R TP + +N +SRL + +S D +
Sbjct: 938 ---------PSRVTSRTTPRRSRSVSPCSN------VESRLLPRYSHSGSSSPDTKVKPE 982
Query: 159 ----CQHLGKRKKMPKALRQLKPGQNSCRDSDSESASGESKGFHRSSSRERLS-----DS 209
H G PK Q PG S S S +SK S LS S
Sbjct: 983 TPPRQSHSGSISPYPKVKAQTPPGP-SLSGSKSPCPQEKSKDSLVQSCPGSLSLCAGVKS 1041
Query: 210 SAPSSLGTGYFRSGKMCLGEEACLKSGNDMKRDVSNTSSWASNRES 255
S P G YF + L ++ ++ D + D S+ S+ ES
Sbjct: 1042 STPP--GESYFGVSSLQLKGQS--QTSPDHRSDTSSPEVRQSHSES 1083
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 36.6 bits (83), Expect = 0.023
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 6 RGHGLRKKRRSRSQRDRERRSRGGL----GAGAAGGGGAGRTRALSLASSSGSDKEDNGK 61
RG +KRRS S RSR G+ + G +G + + S +S SGS
Sbjct: 57 RGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS-SASSRSGSSSTSRSS 115
Query: 62 PPSSAPSRPRPPRRK---RRESTS 82
SS+ P P RR+ RR S S
Sbjct: 116 SSSSSSGSPSPSRRRHDNRRRSRS 139
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 36.6 bits (83), Expect = 0.023
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 6 RGHGLRKKRRSRSQRDRERRSRGGL----GAGAAGGGGAGRTRALSLASSSGSDKEDNGK 61
RG +KRRS S RSR G+ + G +G + + S +S SGS
Sbjct: 57 RGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS-SASSRSGSSSTSRSS 115
Query: 62 PPSSAPSRPRPPRRK---RRESTS 82
SS+ P P RR+ RR S S
Sbjct: 116 SSSSSSGSPSPSRRRHDNRRRSRS 139
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 36.6 bits (83), Expect = 0.023
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 13/213 (6%)
Query: 3 GPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKP 62
G +R H K R S R +RS+ R+R+ + + S D+ + P
Sbjct: 306 GRSRSHTRSKSRSSSKSHSRRKRSQ-----------SKHRSRSHNRSRSRQKDRRRSKSP 354
Query: 63 -PSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPL 121
+ SR R R R S +D + V + EK+ + + EK +
Sbjct: 355 HKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKN 414
Query: 122 TKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQNS 181
+ +E + K + DR+ ++ Q K ++ ++ +++ +
Sbjct: 415 KDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRS-KEIDEKRKK 473
Query: 182 CRDSDSESASGESKGFHRSSSRERLSDSSAPSS 214
+ S + S + RSSSRER S SS
Sbjct: 474 DKKSRTPPRSYNASRRSRSSSRERRRRRSRSSS 506
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 36.6 bits (83), Expect = 0.023
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 13/213 (6%)
Query: 3 GPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKP 62
G +R H K R S R +RS+ R+R+ + + S D+ + P
Sbjct: 190 GRSRSHTRSKSRSSSKSHSRRKRSQ-----------SKHRSRSHNRSRSRQKDRRRSKSP 238
Query: 63 -PSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEKDVALKPQERVEKRQTPL 121
+ SR R R R S +D + V + EK+ + + EK +
Sbjct: 239 HKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKN 298
Query: 122 TKKKREALTNGLSFHSKKSRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQLKPGQNS 181
+ +E + K + DR+ ++ Q K ++ ++ +++ +
Sbjct: 299 KDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRS-KEIDEKRKK 357
Query: 182 CRDSDSESASGESKGFHRSSSRERLSDSSAPSS 214
+ S + S + RSSSRER S SS
Sbjct: 358 DKKSRTPPRSYNASRRSRSSSRERRRRRSRSSS 390
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 36.6 bits (83), Expect = 0.023
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 6 RGHGLRKKRRSRSQRDRERRSRGGL----GAGAAGGGGAGRTRALSLASSSGSDKEDNGK 61
RG +KRRS S RSR G+ + G +G + + S +S SGS
Sbjct: 57 RGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS-SASSRSGSSSTSRSS 115
Query: 62 PPSSAPSRPRPPRRK---RRESTS 82
SS+ P P RR+ RR S S
Sbjct: 116 SSSSSSGSPSPSRRRHDNRRRSRS 139
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,626,797
Number of Sequences: 37866
Number of extensions: 607418
Number of successful extensions: 7743
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 357
Number of HSP's that attempted gapping in prelim test: 6170
Number of HSP's gapped (non-prelim): 1510
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.