Guide to the Human Genome
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Name: LOC147710 Sequence: fasta or formatted (192aa) NCBI GI: 169214369
Description:

PREDICTED: hypothetical protein LOC147710

Not currently referenced in the text

Other entries for this name:
alt mRNA {192aa} PREDICTED: hypothetical protein LOC147710
alt mRNA {192aa} PREDICTED: hypothetical protein LOC147710
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         15           2
 C cysteine            2.6          5           1
 D aspartate           3.1          6           1
 E glutamate           4.7          9           1
 F phenylalanine       2.6          5           1
 G glycine             7.8         15           2
 H histidine           0.0          0           0
 I isoleucine          7.8         15           3
 K lysine              3.6          7           2
 L leucine            10.9         21           2
 M methionine          4.7          9           1
 N asparagine          2.1          4           1
 P proline            10.9         21           2
 Q glutamine           4.7          9           1
 R arginine            4.2          8           2
 S serine              7.8         15           1
 T threonine           6.8         13           4
 V valine              5.2         10           2
 W tryptophan          1.6          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC147710 
LOC147710             1.000   PREDICTED: hypothetical protein LOC147710 
LOC147710             1.000   PREDICTED: hypothetical protein LOC147710 
AGER                  0.060   advanced glycosylation end product-specific receptor...
CEACAM16              0.049   carcinoembryonic antigen-related cell adhesion molec...
ROBO4                 0.047   roundabout homolog 4, magic roundabout 
BCAM                  0.041   basal cell adhesion molecule isoform 2 precursor [Ho...
BCAM                  0.041   basal cell adhesion molecule isoform 1 precursor [Ho...
SPEG                  0.041   SPEG complex locus 
TTN                   0.038   titin isoform novex-3 
ADAMTSL3              0.038   ADAMTS-like 3 precursor 
CEACAM20              0.038   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.038   carcinoembryonic antigen-related cell adhesion mole...
CEACAM5               0.036   carcinoembryonic antigen-related cell adhesion molec...
HMCN1                 0.036   hemicentin 1 
HMCN2                 0.033   PREDICTED: hemicentin 2 
HMCN2                 0.033   PREDICTED: hemicentin 2 
HMCN2                 0.033   PREDICTED: hemicentin 2 
PTK7                  0.033   PTK7 protein tyrosine kinase 7 isoform a precursor [...
PTK7                  0.033   PTK7 protein tyrosine kinase 7 isoform c precursor [...
PTK7                  0.033   PTK7 protein tyrosine kinase 7 isoform b precursor [...
LRFN1                 0.027   leucine rich repeat and fibronectin type III domain...
LRIG3                 0.027   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.027   leucine-rich repeats and immunoglobulin-like domain...
FGFRL1                0.025   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.025   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.025   fibroblast growth factor receptor-like 1 precursor [...
FSTL4                 0.025   follistatin-like 4 
ROR1                  0.025   receptor tyrosine kinase-like orphan receptor 1 iso...
ROR1                  0.025   receptor tyrosine kinase-like orphan receptor 1 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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