Guide to the Human Genome
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Name: LOC100132317 Sequence: fasta or formatted (85aa) NCBI GI: 169172800
Description:

PREDICTED: similar to Putative uncharacterized protein C20orf69

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          4           2
 C cysteine            0.0          0           0
 D aspartate           4.7          4           1
 E glutamate          12.9         11           3
 F phenylalanine       4.7          4           1
 G glycine             3.5          3           1
 H histidine           4.7          4           1
 I isoleucine          9.4          8           2
 K lysine             12.9         11           2
 L leucine            12.9         11           3
 M methionine          2.4          2           1
 N asparagine          1.2          1           1
 P proline             3.5          3           1
 Q glutamine           7.1          6           2
 R arginine            2.4          2           1
 S serine              3.5          3           1
 T threonine           5.9          5           1
 V valine              1.2          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative uncharacterized prot... 
LOC100286914          1.000   PREDICTED: hypothetical protein XP_002342632 
LOC100287654          1.000   PREDICTED: hypothetical protein XP_002342052 
LOC100288646          1.000   PREDICTED: hypothetical protein XP_002344292 
LOC100288102          0.966   PREDICTED: hypothetical protein XP_002342211 
LOC100288169          0.473   PREDICTED: hypothetical protein XP_002342648 
SEPT14                0.473   septin 14 
SEPT11                0.130   septin 11 
SEPT8                 0.096   septin 8 isoform d 
SEPT8                 0.096   septin 8 isoform c 
SEPT8                 0.096   septin 8 isoform a 
SEPT8                 0.096   septin 8 isoform b 
SEPT10                0.096   septin 10 isoform 2 
SEPT10                0.096   septin 10 isoform 1 
SEPT6                 0.075   septin 6 isoform B 
SEPT6                 0.075   septin 6 isoform D 
SEPT6                 0.075   septin 6 isoform A 
SEPT6                 0.075   septin 6 isoform A 
LOC643166             0.041   PREDICTED: similar to hCG1744891 
GPC3                  0.041   glypican 3 
UACA                  0.034   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.034   uveal autoantigen with coiled-coil domains and ankyr...
CLIP1                 0.034   restin isoform b 
CLIP1                 0.034   restin isoform a 
EEA1                  0.034   early endosome antigen 1, 162kD 
NSD1                  0.027   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.027   nuclear receptor binding SET domain protein 1 isofor...
DMAP1                 0.027   DNA methyltransferase 1 associated protein 1 
DMAP1                 0.027   DNA methyltransferase 1 associated protein 1 
DMAP1                 0.027   DNA methyltransferase 1 associated protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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