Guide to the Human Genome
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Name: LOC643166 Sequence: fasta or formatted (154aa) NCBI GI: 239750312
Description:

PREDICTED: similar to hCG1744891

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          5           1
 C cysteine            2.6          4           1
 D aspartate           6.5         10           2
 E glutamate          15.6         24           3
 F phenylalanine       2.6          4           1
 G glycine             0.6          1           1
 H histidine           1.9          3           1
 I isoleucine          6.5         10           2
 K lysine             12.3         19           2
 L leucine            11.7         18           2
 M methionine          5.2          8           1
 N asparagine          5.8          9           2
 P proline             1.9          3           1
 Q glutamine           7.1         11           2
 R arginine            1.9          3           1
 S serine              3.9          6           2
 T threonine           3.9          6           1
 V valine              5.8          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1744891 
LOC728897             0.935   PREDICTED: similar to coiled-coil domain containing...
LOC728897             0.871   PREDICTED: similar to coiled-coil domain containing...
CCDC29                0.828   coiled-coil domain containing 29 
LOC100289454          0.824   PREDICTED: hypothetical protein XP_002342954 
LOC100287836          0.774   PREDICTED: hypothetical protein XP_002344496 
ANKRD18B              0.703   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.703   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.703   PREDICTED: ankyrin repeat domain 18B 
ANKRD18A              0.695   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.695   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.695   PREDICTED: ankyrin repeat domain 18A 
LOC728384             0.581   PREDICTED: similar to coiled-coil domain containing...
LOC100132733          0.513   PREDICTED: similar to FLJ00310 protein 
ANKRD26               0.437   ankyrin repeat domain 26 
LOC100131673          0.280   PREDICTED: hypothetical protein 
LOC100131673          0.280   PREDICTED: hypothetical protein 
CCDC144A              0.208   coiled-coil domain containing 144A 
MYH4                  0.079   myosin, heavy polypeptide 4, skeletal muscle 
CCDC88A               0.079   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.079   coiled-coil domain containing 88A isoform 1 
MYH8                  0.075   myosin, heavy chain 8, skeletal muscle, perinatal [...
CALCOCO2              0.075   calcium binding and coiled-coil domain 2 
RB1CC1                0.072   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.072   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
CEP135                0.072   centrosome protein 4 
CCDC18                0.072   sarcoma antigen NY-SAR-41 
MYH3                  0.065   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH1                  0.065   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH13                 0.061   myosin, heavy polypeptide 13, skeletal muscle [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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