Search of human proteins with 169168671

Search of human proteins with 169168671

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
         (241 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa...   492   e-139
gi|239740855 PREDICTED: similar to major histocompatibility comp...   263   1e-70
gi|239740853 PREDICTED: similar to major histocompatibility comp...   263   1e-70
gi|52630344 major histocompatibility complex, class II, DR beta ...   261   4e-70
gi|239758090 PREDICTED: major histocompatibility complex, class ...   261   4e-70
gi|155030211 major histocompatibility complex, class II, DR beta...   261   5e-70
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   258   2e-69
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   258   2e-69
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   258   2e-69
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   258   2e-69
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   258   2e-69
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   258   2e-69
gi|17986005 major histocompatibility complex, class II, DR beta ...   258   4e-69
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   255   2e-68
gi|239740859 PREDICTED: similar to major histocompatibility comp...   255   2e-68
gi|239740857 PREDICTED: similar to major histocompatibility comp...   255   2e-68
gi|18641375 major histocompatibility complex, class II, DR beta ...   251   5e-67
gi|150418002 major histocompatibility complex, class II, DQ beta...   193   1e-49
gi|239758095 PREDICTED: similar to major histocompatibility comp...   191   5e-49
gi|239740749 PREDICTED: similar to major histocompatibility comp...   191   5e-49
gi|169168591 PREDICTED: similar to major histocompatibility comp...   189   1e-48
gi|239748788 PREDICTED: similar to major histocompatibility comp...   188   3e-48
gi|239740863 PREDICTED: similar to major histocompatibility comp...   188   3e-48
gi|239513955 PREDICTED: similar to major histocompatibility comp...   188   3e-48
gi|239740920 PREDICTED: similar to major histocompatibility comp...   185   3e-47
gi|239740918 PREDICTED: similar to major histocompatibility comp...   185   3e-47
gi|24797076 major histocompatibility complex, class II, DP beta ...   177   1e-44
gi|4504403 major histocompatibility complex, class II, DO beta p...   170   1e-42
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   158   5e-39
gi|4504399 major histocompatibility complex, class II, DM beta p...    77   1e-14

>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 241

 Score =  492 bits (1266), Expect = e-139
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MSLQVILLALRVPGAPSRLDGAGEAPWGTEHSPGLAVRSIRLGRHPQGQKPGRPQAEHLP 60
           MSLQVILLALRVPGAPSRLDGAGEAPWGTEHSPGLAVRSIRLGRHPQGQKPGRPQAEHLP
Sbjct: 1   MSLQVILLALRVPGAPSRLDGAGEAPWGTEHSPGLAVRSIRLGRHPQGQKPGRPQAEHLP 60

Query: 61  EAQELAPSAEWDSGLAAGRVLKLLLRALIRLHKKRFNELQPKGTMYPAKTEPLHHRNPLV 120
           EAQELAPSAEWDSGLAAGRVLKLLLRALIRLHKKRFNELQPKGTMYPAKTEPLHHRNPLV
Sbjct: 61  EAQELAPSAEWDSGLAAGRVLKLLLRALIRLHKKRFNELQPKGTMYPAKTEPLHHRNPLV 120

Query: 121 CSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRSGEVYTCQVE 180
           CSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRSGEVYTCQVE
Sbjct: 121 CSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRSGEVYTCQVE 180

Query: 181 HPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGNT 240
           HPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGNT
Sbjct: 181 HPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGNT 240

Query: 241 F 241
           F
Sbjct: 241 F 241


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  263 bits (671), Expect = 1e-70
 Identities = 126/140 (90%), Positives = 132/140 (94%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 125 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 184

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSAR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 185 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFLG 244

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQPTG
Sbjct: 245 AGLFIYFRNQKGHSGLQPTG 264


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  263 bits (671), Expect = 1e-70
 Identities = 126/140 (90%), Positives = 132/140 (94%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 124 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSAR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQPTG
Sbjct: 244 AGLFIYFRNQKGHSGLQPTG 263


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  261 bits (667), Expect = 4e-70
 Identities = 124/140 (88%), Positives = 133/140 (95%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           +QPK T+YP+KT+PL H N LVCSV+GFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 124 VQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+WSAR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
           TGLFIYFRNQKGHSGLQPTG
Sbjct: 244 TGLFIYFRNQKGHSGLQPTG 263


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  261 bits (667), Expect = 4e-70
 Identities = 124/140 (88%), Positives = 133/140 (95%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           +QPK T+YP+KT+PL H N LVCSV+GFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 136 VQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 195

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+WSAR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 196 FQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLLFLG 255

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
           TGLFIYFRNQKGHSGLQPTG
Sbjct: 256 TGLFIYFRNQKGHSGLQPTG 275


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  261 bits (666), Expect = 5e-70
 Identities = 125/140 (89%), Positives = 131/140 (93%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           +QPK T+YP+KT+PL H N LVCSVSGFYPGSIEVRWF NGQEEKA +VS GLIQNGDWT
Sbjct: 124 VQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNGDWT 183

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQPTG
Sbjct: 244 AGLFIYFRNQKGHSGLQPTG 263


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score =  258 bits (660), Expect = 2e-69
 Identities = 124/140 (88%), Positives = 130/140 (92%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 111 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 170

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 171 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 230

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQPTG
Sbjct: 231 AGLFIYFRNQKGHSGLQPTG 250


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  258 bits (660), Expect = 2e-69
 Identities = 124/140 (88%), Positives = 130/140 (92%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQPTG
Sbjct: 244 AGLFIYFRNQKGHSGLQPTG 263


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  258 bits (660), Expect = 2e-69
 Identities = 124/140 (88%), Positives = 130/140 (92%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQPTG
Sbjct: 244 AGLFIYFRNQKGHSGLQPTG 263


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  258 bits (660), Expect = 2e-69
 Identities = 124/140 (88%), Positives = 130/140 (92%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 122 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 181

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 182 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 241

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQPTG
Sbjct: 242 AGLFIYFRNQKGHSGLQPTG 261


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  258 bits (660), Expect = 2e-69
 Identities = 124/140 (88%), Positives = 130/140 (92%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQPTG
Sbjct: 244 AGLFIYFRNQKGHSGLQPTG 263


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  258 bits (660), Expect = 2e-69
 Identities = 124/140 (88%), Positives = 130/140 (92%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 122 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 181

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 182 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 241

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQPTG
Sbjct: 242 AGLFIYFRNQKGHSGLQPTG 261


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  258 bits (658), Expect = 4e-69
 Identities = 124/140 (88%), Positives = 130/140 (92%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 124 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSVTS LTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQPTG
Sbjct: 244 AGLFIYFRNQKGHSGLQPTG 263


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  255 bits (652), Expect = 2e-68
 Identities = 122/140 (87%), Positives = 128/140 (91%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + PK T+YP+KT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEK  VVS GLI NGDWT
Sbjct: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQP G
Sbjct: 244 AGLFIYFRNQKGHSGLQPRG 263


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  255 bits (652), Expect = 2e-68
 Identities = 122/140 (87%), Positives = 128/140 (91%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + PK T+YP+KT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEK  VVS GLI NGDWT
Sbjct: 125 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 184

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 185 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 244

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQP G
Sbjct: 245 AGLFIYFRNQKGHSGLQPRG 264


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  255 bits (652), Expect = 2e-68
 Identities = 122/140 (87%), Positives = 128/140 (91%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           + PK T+YP+KT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEK  VVS GLI NGDWT
Sbjct: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYFRNQKGHSGLQP G
Sbjct: 244 AGLFIYFRNQKGHSGLQPRG 263


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  251 bits (640), Expect = 5e-67
 Identities = 119/140 (85%), Positives = 129/140 (92%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           ++PK T+YPA+T+ L H N LVCSV+GFYPGSIEVRWF+N QEEKA VVS GLIQNGDWT
Sbjct: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW A++ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243

Query: 219 TGLFIYFRNQKGHSGLQPTG 238
            GLFIYF+NQKGHSGL PTG
Sbjct: 244 AGLFIYFKNQKGHSGLHPTG 263


>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  193 bits (491), Expect = 1e-49
 Identities = 97/179 (54%), Positives = 124/179 (69%), Gaps = 6/179 (3%)

Query: 52  GRPQAEHLPEAQELAPSAEWDSGLAAGRVLKLLLRALIRLHKKRFNELQPKGTMYPAKTE 111
           GRP AE+    +E+      +         ++  R +++        ++P  T+ P++TE
Sbjct: 86  GRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQ------RRVEPTVTISPSRTE 139

Query: 112 PLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRS 171
            L+H N LVCSV+ FYPG I+VRWF+N QEE A VVS  LI+NGDWTFQ LVMLE  P+ 
Sbjct: 140 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQR 199

Query: 172 GEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 230
           G+VYTC VEHPS+ SP+TVEW A++ESAQSKMLSGVGGFVLGL+FLG GL I  R+QKG
Sbjct: 200 GDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKG 258


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  191 bits (485), Expect = 5e-49
 Identities = 89/132 (67%), Positives = 109/132 (82%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           ++P  T+ P++TE L+H N LVCSV+ FYP  I+VRWF+NGQEE A VVS  LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A++ESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 219 TGLFIYFRNQKG 230
            GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  191 bits (485), Expect = 5e-49
 Identities = 89/132 (67%), Positives = 109/132 (82%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           ++P  T+ P++TE L+H N LVCSV+ FYP  I+VRWF+NGQEE A VVS  LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A++ESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 219 TGLFIYFRNQKG 230
            GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  189 bits (481), Expect = 1e-48
 Identities = 96/179 (53%), Positives = 122/179 (68%), Gaps = 6/179 (3%)

Query: 52  GRPQAEHLPEAQELAPSAEWDSGLAAGRVLKLLLRALIRLHKKRFNELQPKGTMYPAKTE 111
           G P AE+    +E+                +L LR  ++        ++P  T+ P++TE
Sbjct: 86  GPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELRTTLQ------RRVEPTVTISPSRTE 139

Query: 112 PLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRS 171
            L+H N LVCSV+ FYP  I+VRWF+N QEE A VVS  LI+NGDWTFQ LVMLE  P+ 
Sbjct: 140 ALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQR 199

Query: 172 GEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 230
           G+VYTC VEHPS+ SP+TVEW A++ESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 200 GDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  188 bits (478), Expect = 3e-48
 Identities = 88/132 (66%), Positives = 108/132 (81%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           ++P  T+ P++TE L+H N LVCSV+ FYP  I+VRWF+N QEE A VVS  LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A++ESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 219 TGLFIYFRNQKG 230
            GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  188 bits (478), Expect = 3e-48
 Identities = 88/132 (66%), Positives = 108/132 (81%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           ++P  T+ P++TE L+H N LVCSV+ FYP  I+VRWF+N QEE A VVS  LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A++ESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 219 TGLFIYFRNQKG 230
            GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  188 bits (478), Expect = 3e-48
 Identities = 88/132 (66%), Positives = 108/132 (81%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           ++P  T+ P++TE L+H N LVCSV+ FYP  I+VRWF+N QEE A VVS  LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A++ESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246

Query: 219 TGLFIYFRNQKG 230
            GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  185 bits (470), Expect = 3e-47
 Identities = 93/179 (51%), Positives = 121/179 (67%), Gaps = 6/179 (3%)

Query: 52  GRPQAEHLPEAQELAPSAEWDSGLAAGRVLKLLLRALIRLHKKRFNELQPKGTMYPAKTE 111
           G P AE+    +E+      +         +L LR  ++        ++P  T+ P++TE
Sbjct: 86  GPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQ------RRVEPTVTISPSRTE 139

Query: 112 PLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRS 171
            L+H N LVCSV+ FYP  I+VRWF+N QEE   VVS  LI+NGDWTFQ LVMLE  P+ 
Sbjct: 140 ALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQR 199

Query: 172 GEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 230
           G+VYTC VEHPS+ +P+ VEW A++ESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 200 GDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  185 bits (470), Expect = 3e-47
 Identities = 93/179 (51%), Positives = 121/179 (67%), Gaps = 6/179 (3%)

Query: 52  GRPQAEHLPEAQELAPSAEWDSGLAAGRVLKLLLRALIRLHKKRFNELQPKGTMYPAKTE 111
           G P AE+    +E+      +         +L LR  ++        ++P  T+ P++TE
Sbjct: 86  GPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQ------RRVEPTVTISPSRTE 139

Query: 112 PLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRS 171
            L+H N LVCSV+ FYP  I+VRWF+N QEE   VVS  LI+NGDWTFQ LVMLE  P+ 
Sbjct: 140 ALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQR 199

Query: 172 GEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 230
           G+VYTC VEHPS+ +P+ VEW A++ESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 200 GDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  177 bits (448), Expect = 1e-44
 Identities = 82/135 (60%), Positives = 104/135 (77%)

Query: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
           +QP+  + P+K  PL H N LVC V+ FYPGSI+VRWF NGQEE A VVS  LI+NGDWT
Sbjct: 122 VQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWT 181

Query: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
           FQ LVMLE  P+ G+VYTCQVEH S+ SP+TVEW A+++SA+SK L+G GGFVLGL+  G
Sbjct: 182 FQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGLIICG 241

Query: 219 TGLFIYFRNQKGHSG 233
            G+F++ R++K   G
Sbjct: 242 VGIFMHRRSKKVQRG 256


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  170 bits (430), Expect = 1e-42
 Identities = 79/142 (55%), Positives = 105/142 (73%)

Query: 98  ELQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDW 157
           ++QP+ T+YP +T  LH  N L CSV+GFYPG I+++WF NGQEE+A V+S G I+NGDW
Sbjct: 120 KVQPEVTVYPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDW 179

Query: 158 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFL 217
           TFQT+VMLE  P  G VYTC V+H S+ SP++VEW A++E +  KMLSG+  F+LGL+FL
Sbjct: 180 TFQTVVMLEMTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFL 239

Query: 218 GTGLFIYFRNQKGHSGLQPTGN 239
             G+ I  R QKG+   Q +GN
Sbjct: 240 LVGIVIQLRAQKGYVRTQMSGN 261


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  158 bits (399), Expect = 5e-39
 Identities = 73/86 (84%), Positives = 79/86 (91%)

Query: 101 PKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQ 160
           P+ T+YPAKT+PL H N LVCSV+GFYPGSIEVRWF+NGQEEK  VVS GLIQNGDWTFQ
Sbjct: 138 PEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQ 197

Query: 161 TLVMLETVPRSGEVYTCQVEHPSVTS 186
           TLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 198 TLVMLETVPRSGEVYTCQVEHPSLTS 223


>gi|4504399 major histocompatibility complex, class II, DM beta
           precursor [Homo sapiens]
          Length = 263

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 108 AKTEPLHHRNP--LVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQ-NGDWTFQTLVM 164
           AKT P + R P  L C V GFYP  + + W +NG+       +    Q NGDWT+QTL  
Sbjct: 120 AKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSH 179

Query: 165 LETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIY 224
           L   P  G+ YTC VEH     P+  +W+      Q+  +S V    LGL  +   L + 
Sbjct: 180 LALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVI 238

Query: 225 FRNQKGHSGLQP 236
              + GHS   P
Sbjct: 239 SWRRAGHSSYTP 250


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,628,167
Number of Sequences: 37866
Number of extensions: 523176
Number of successful extensions: 1595
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1461
Number of HSP's gapped (non-prelim): 163
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.