Guide to the Human Genome
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Name: LOC100294161 Sequence: fasta or formatted (264aa) NCBI GI: 239740693
Description:

PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 2

Referenced in:

HLA and Related Proteins

Other entries for this name:
alt prot [266aa] PREDICTED: similar to HLA class II histocompatibility antigen, DR...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          8           1
 C cysteine            1.9          5           1
 D aspartate           2.7          7           1
 E glutamate           8.7         23           2
 F phenylalanine       6.1         16           2
 G glycine             9.8         26           2
 H histidine           3.0          8           2
 I isoleucine          1.5          4           1
 K lysine              4.2         11           2
 L leucine             8.3         22           2
 M methionine          1.9          5           1
 N asparagine          3.4          9           1
 P proline             3.8         10           1
 Q glutamine           6.4         17           2
 R arginine            8.0         21           2
 S serine              7.2         19           1
 T threonine           5.3         14           1
 V valine              9.8         26           2
 W tryptophan          1.9          5           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to HLA class II histocompatibili... 
LOC100294189          1.000   PREDICTED: similar to HLA class II histocompatibili...
LOC100294189          0.875   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.875   PREDICTED: similar to HLA class II histocompatibili...
LOC100294468          0.812   PREDICTED: similar to HLA class II histocompatibili...
HLA-DRB3              0.797   major histocompatibility complex, class II, DR beta ...
LOC100294275          0.787   PREDICTED: similar to major histocompatibility comp...
LOC100294275          0.785   PREDICTED: similar to major histocompatibility comp...
HLA-DRB1              0.782   major histocompatibility complex, class II, DR beta...
LOC100290966          0.778   PREDICTED: hypothetical protein XP_002346811 
HLA-DRB5              0.764   major histocompatibility complex, class II, DR beta ...
LOC100294276          0.762   PREDICTED: similar to major histocompatibility comp...
LOC100294276          0.762   PREDICTED: similar to major histocompatibility comp...
HLA-DRB4              0.738   PREDICTED: major histocompatibility complex, class ...
HLA-DRB4              0.738   major histocompatibility complex, class II, DR beta ...
LOC100294036          0.718   PREDICTED: similar to HLA class II histocompatibili...
LOC100133811          0.582   PREDICTED: similar to HLA class II histocompatibili...
LOC100293977          0.565   PREDICTED: similar to major histocompatibility comp...
LOC100294191          0.565   PREDICTED: similar to major histocompatibility comp...
LOC100133583          0.559   PREDICTED: similar to major histocompatibility comp...
LOC100294278          0.559   PREDICTED: similar to major histocompatibility comp...
LOC100294115          0.559   PREDICTED: similar to major histocompatibility comp...
HLA-DQB1              0.556   major histocompatibility complex, class II, DQ beta...
LOC100133583          0.554   PREDICTED: similar to major histocompatibility comp...
HLA-DPB1              0.552   major histocompatibility complex, class II, DP beta ...
LOC100294318          0.544   PREDICTED: similar to major histocompatibility comp...
LOC100294318          0.544   PREDICTED: similar to major histocompatibility comp...
HLA-DOB               0.502   major histocompatibility complex, class II, DO beta p...
LOC651845             0.446   PREDICTED: similar to MHC class II antigen 
LOC100133661          0.209   PREDICTED: similar to MHC class II antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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