Guide to the Human Genome
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Name: NHLH2 Sequence: fasta or formatted (135aa) NCBI GI: 161484632
Description:

nescient helix loop helix 2

Referenced in:

Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt mRNA [135aa] nescient helix loop helix 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         14           2
 C cysteine            0.7          1           1
 D aspartate           6.7          9           1
 E glutamate           8.1         11           2
 F phenylalanine       1.5          2           1
 G glycine             5.2          7           2
 H histidine           3.7          5           1
 I isoleucine          3.7          5           1
 K lysine              5.9          8           2
 L leucine            11.9         16           2
 M methionine          1.5          2           2
 N asparagine          1.5          2           1
 P proline             6.7          9           2
 Q glutamine           2.2          3           2
 R arginine            9.6         13           5
 S serine              9.6         13           2
 T threonine           3.7          5           1
 V valine              4.4          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nescient helix loop helix 2 
NHLH2                 1.000   nescient helix loop helix 2 
NHLH1                 0.494   nescient helix loop helix 1 
MSC                   0.156   musculin 
TAL1                  0.156   T-cell acute lymphocytic leukemia 1 
SCXB                  0.152   scleraxis homolog B 
SCXA                  0.152   scleraxis homolog A 
TAL2                  0.152   T-cell acute lymphocytic leukemia 2 
LYL1                  0.148   lymphoblastic leukemia derived sequence 1 
TCF15                 0.140   basic helix-loop-helix transcription factor 15 [Homo...
LOC100129654          0.136   PREDICTED: similar to transcription factor 23 [Homo...
LOC100129654          0.136   PREDICTED: similar to transcription factor 23 [Homo...
HAND1                 0.136   basic helix-loop-helix transcription factor HAND1 [Ho...
PTF1A                 0.136   pancreas specific transcription factor, 1a 
HAND2                 0.132   basic helix-loop-helix transcription factor HAND2 [H...
FERD3L                0.128   nephew of atonal 3 
TWIST1                0.123   twist 
TCF21                 0.123   transcription factor 21 
TCF21                 0.123   transcription factor 21 
LOC100129654          0.119   PREDICTED: similar to transcription factor 23 [Homo...
TWIST2                0.119   twist homolog 2 
NEUROD4               0.111   neurogenic differentiation 4 
ATOH1                 0.111   atonal homolog 1 
ATOH7                 0.107   atonal homolog 7 
TCF23                 0.107   transcription factor 23 
NEUROG1               0.103   neurogenin 1 
NEUROD1               0.103   neurogenic differentiation 1 
NEUROD6               0.095   neurogenic differentiation 6 
NEUROG3               0.095   neurogenin 3 
ID4                   0.091   inhibitor of DNA binding 4, dominant negative helix-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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