Guide to the Human Genome
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Name: SCXB Sequence: fasta or formatted (201aa) NCBI GI: 148922889
Description:

scleraxis homolog B

Referenced in:

Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         21           2
 C cysteine            3.0          6           1
 D aspartate           5.0         10           1
 E glutamate           5.0         10           1
 F phenylalanine       2.5          5           2
 G glycine            10.4         21           4
 H histidine           2.5          5           1
 I isoleucine          2.5          5           1
 K lysine              3.5          7           1
 L leucine             7.0         14           2
 M methionine          0.5          1           1
 N asparagine          3.0          6           1
 P proline            11.4         23           9
 Q glutamine           3.0          6           1
 R arginine           12.9         26           3
 S serine              8.5         17           2
 T threonine           5.5         11           1
 V valine              2.0          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   scleraxis homolog B 
SCXA                  1.000   scleraxis homolog A 
TCF15                 0.396   basic helix-loop-helix transcription factor 15 [Homo...
HAND2                 0.137   basic helix-loop-helix transcription factor HAND2 [H...
MSC                   0.135   musculin 
TWIST1                0.132   twist 
BHLHA15               0.124   basic helix-loop-helix family, member a15 
HAND1                 0.119   basic helix-loop-helix transcription factor HAND1 [Ho...
TWIST2                0.112   twist homolog 2 
TCF21                 0.112   transcription factor 21 
TCF21                 0.112   transcription factor 21 
ATOH7                 0.107   atonal homolog 7 
BHLHA9                0.107   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.107   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.107   PREDICTED: basic helix-loop-helix family, member a9...
NHLH1                 0.107   nescient helix loop helix 1 
NEUROG3               0.099   neurogenin 3 
NEUROG1               0.096   neurogenin 1 
NEUROG2               0.096   neurogenin 2 
NHLH2                 0.094   nescient helix loop helix 2 
NHLH2                 0.094   nescient helix loop helix 2 
PTF1A                 0.094   pancreas specific transcription factor, 1a 
LYL1                  0.094   lymphoblastic leukemia derived sequence 1 
ATOH1                 0.091   atonal homolog 1 
TAL2                  0.089   T-cell acute lymphocytic leukemia 2 
NEUROD2               0.086   neurogenic differentiation 2 
TAL1                  0.084   T-cell acute lymphocytic leukemia 1 
OLIG1                 0.081   oligodendrocyte transcription factor 1 
NEUROD1               0.079   neurogenic differentiation 1 
NEUROD6               0.076   neurogenic differentiation 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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