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Search of human proteins with 154350246
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo
sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo sapiens] 424 e-119
gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens] 369 e-102
gi|30794246 hypothetical protein LOC90736 [Homo sapiens] 73 2e-13
gi|28269693 xylosyltransferase I [Homo sapiens] 43 2e-04
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 42 5e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 41 8e-04
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 40 0.001
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 40 0.002
gi|91208420 bassoon protein [Homo sapiens] 39 0.002
gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo s... 39 0.002
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 39 0.002
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 39 0.002
gi|150378549 tangerin [Homo sapiens] 39 0.003
gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens] 38 0.005
gi|120587019 zinc finger protein 318 [Homo sapiens] 38 0.005
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 38 0.007
gi|7706435 headcase [Homo sapiens] 37 0.009
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 37 0.009
gi|171543895 ataxin 2 [Homo sapiens] 37 0.012
gi|153251865 hypothetical protein LOC84226 [Homo sapiens] 37 0.012
gi|55749758 DIP2 disco-interacting protein 2 homolog B [Homo sap... 37 0.012
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H... 37 0.015
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 37 0.015
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 37 0.015
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 37 0.015
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 37 0.015
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 36 0.020
gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo ... 36 0.020
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 36 0.020
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 36 0.020
>gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo sapiens]
Length = 207
Score = 424 bits (1089), Expect = e-119
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS
Sbjct: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
Query: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRL 120
FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRL
Sbjct: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRL 120
Query: 121 RGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALC 180
RGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALC
Sbjct: 121 RGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALC 180
Query: 181 QGLYFHINQTLREAHFHSLQHRGRPLT 207
QGLYFHINQTLREAHFHSLQHRGRPLT
Sbjct: 181 QGLYFHINQTLREAHFHSLQHRGRPLT 207
>gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens]
Length = 186
Score = 369 bits (947), Expect = e-102
Identities = 186/207 (89%), Positives = 186/207 (89%), Gaps = 21/207 (10%)
Query: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS
Sbjct: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
Query: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRL 120
FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTE
Sbjct: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTE------------- 107
Query: 121 RGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALC 180
SSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALC
Sbjct: 108 --------SSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALC 159
Query: 181 QGLYFHINQTLREAHFHSLQHRGRPLT 207
QGLYFHINQTLREAHFHSLQHRGRPLT
Sbjct: 160 QGLYFHINQTLREAHFHSLQHRGRPLT 186
>gi|30794246 hypothetical protein LOC90736 [Homo sapiens]
Length = 116
Score = 72.8 bits (177), Expect = 2e-13
Identities = 42/98 (42%), Positives = 51/98 (52%), Gaps = 24/98 (24%)
Query: 74 RKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSD 133
RKRRRNG++E NH Q KR+ RNP+FQDS DTE
Sbjct: 7 RKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVF------------------------ 42
Query: 134 SGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQ 171
S + SSS IN P+RASGPEG+L+Q + N PQ
Sbjct: 43 SWSDNERSSSRINIPERASGPEGNLNQIVTEPDANFPQ 80
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 43.1 bits (100), Expect = 2e-04
Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 48/224 (21%)
Query: 2 GGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAP-RS 60
GG G G GG GP +A+ARGGG G R P+ RGA P R+
Sbjct: 79 GGGGGGGGGGGGRGP---------------QARARGGGPGEPRG---QQPASRGALPARA 120
Query: 61 FHPPAAMSERL---------RPRKRRRNGNEEDNHLP------------PQTKRSSRNPV 99
P + L RP+++ R + +N +P P+T++ P
Sbjct: 121 LDPHPSPLITLETQDGYFSHRPKEKVRTDSNNENSVPKDFENVDNSNFAPRTQKQKHQPE 180
Query: 100 FQDSWDTETVPVMRNSKENRLRGNKAFCASSG-------SDSGGSSSSSSSSINSPDRAS 152
+ +++ E + +G G D ++SS ++ P A
Sbjct: 181 LAKKPPSRQKELLKRKLEQQEKGKGHTFPGKGPGEVLPPGDRAAANSSHGKDVSRPPHAR 240
Query: 153 GPEGSLSQTMAGSSPNTPQPVPEQ-SALCQGLYFHINQTLREAH 195
GS +T P E SAL + H Q + E +
Sbjct: 241 KTGGSSPETKYDQPPKCDISGKEAISALSRAKSKHCRQEIGETY 284
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 41.6 bits (96), Expect = 5e-04
Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 10/147 (6%)
Query: 2 GGRGADAGSSGGTGPTEGYSP-PAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
G R +G++ + P +P P AS+ KARGG G P RGA
Sbjct: 74 GVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSG------PQGGRARGAMA-- 125
Query: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRL 120
H + R R R R R + T R+ Q + SK+
Sbjct: 126 -HVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKAR 184
Query: 121 RGNKAFCASSGSDSGGSSSSSSSSINS 147
R ++ +SS S S SSSSSSSS +S
Sbjct: 185 RRTRSSSSSSSSSSSSSSSSSSSSSSS 211
Score = 30.8 bits (68), Expect = 0.85
Identities = 49/194 (25%), Positives = 68/194 (35%), Gaps = 47/194 (24%)
Query: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTT----PSVPSLRGA 56
+G AD G G G PA +A +AR G G R + PS P+ R A
Sbjct: 39 VGAASADTGVRGC-----GARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAA 93
Query: 57 A-PRSFHPPAAMSE------------------RLRPRKRRRNGNEEDNHLPPQTKRSSRN 97
P + PP + + + RKR R+ + + K+ SR
Sbjct: 94 PRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRK 153
Query: 98 PVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGS-------SSSSSSSINSPDR 150
DT RN + +G KA A + SSSSSSS +S
Sbjct: 154 -------DTS-----RNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSS 201
Query: 151 ASGPEGSLSQTMAG 164
+S S S + G
Sbjct: 202 SSSSSSSSSSSSDG 215
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 40.8 bits (94), Expect = 8e-04
Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 21 SPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNG 80
SP S R+ +R AR RG R+ TP+ R RS PA S R R R R G
Sbjct: 639 SPARRSGRSRSRTPAR---RGRSRSRTPA----RRGRSRS-RTPARRSGRSRSRTPARRG 690
Query: 81 NEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGS--- 137
+ P + + SR+ V + + T S + R NK+ + S S S
Sbjct: 691 RSR-SRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEM 749
Query: 138 -----SSSSSSSINSPDRASGPEGSLSQTMAGSSP 167
SS S S++SP + SL ++++GSSP
Sbjct: 750 KKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSP 784
Score = 40.8 bits (94), Expect = 8e-04
Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 36/191 (18%)
Query: 21 SPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSER-------LRP 73
+P A S ++ A A G N SVP+ PPA+ + L+P
Sbjct: 2467 TPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQP 2526
Query: 74 RKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTET------VPVMRNSKENRL------- 120
K RR+ + + + SS + S + + +PV R+
Sbjct: 2527 AKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAP 2586
Query: 121 ----------------RGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAG 164
R ++ +SS S S SSSSSSSS +S +S S S + +
Sbjct: 2587 KEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2646
Query: 165 SSPNTPQPVPE 175
SSP+ +P P+
Sbjct: 2647 SSPSPAKPGPQ 2657
Score = 36.2 bits (82), Expect = 0.020
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 98 PVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGS 157
P + + ++ +KE R + + +SS S S SSSSSSSS +S + G
Sbjct: 2510 PASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLP 2569
Query: 158 LSQTMAGSSPNTPQPVPEQS 177
+ +A +P P P+++
Sbjct: 2570 VQPEVALKRVPSPTPAPKEA 2589
Score = 34.7 bits (78), Expect = 0.059
Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 29/167 (17%)
Query: 8 AGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAM 67
+ SS + + S ++S+ +++ + G P V R +P PA
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPT----PA-- 2585
Query: 68 SERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFC 127
P++ R G + P KR R+ +S + + +
Sbjct: 2586 -----PKEAVREGRPPE---PTPAKRKRRSS---------------SSSSSSSSSSSSSS 2622
Query: 128 ASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVP 174
+SS S S SSSSSSSS +S +S P + A P +P+ P
Sbjct: 2623 SSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPP 2669
Score = 31.6 bits (70), Expect = 0.50
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 28/154 (18%)
Query: 34 KARGGGRGGRRNT--TPSVPSLRGAAPR----------------SFHPPAAMSERLRPRK 75
++R G G R+ TPS SL G++P S P A+ + RPR
Sbjct: 1438 RSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTPRPRS 1497
Query: 76 RRRNGNEEDNH-LPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDS 134
R + E +N L PQ +RS + S D +TV + +R ++ +
Sbjct: 1498 RSPSSPELNNKCLTPQRERSGS----ESSVDQKTVARTPLGQRSRSGSSQELDVKPSA-- 1551
Query: 135 GGSSSSSSSSINSPDRASGPEGSLSQ-TMAGSSP 167
S S S +SPD + L Q + +GSSP
Sbjct: 1552 --SPQERSESDSSPDSKAKTRTPLRQRSRSGSSP 1583
Score = 31.6 bits (70), Expect = 0.50
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 27 TRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLR--PRKRRRNGNEED 84
TR +R++A R R+ TP V R RS P R R P RRR+ +
Sbjct: 1907 TRRRSRSRASPVSRRRSRSRTPPVTRRRS---RSRTPTTRRRSRSRTPPVTRRRSRSRT- 1962
Query: 85 NHLPPQTKRSSRN---PVFQDSWDTETVPVMRNSKENR 119
PP T+R SR+ P+ + + T PV R +R
Sbjct: 1963 ---PPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSR 1997
Score = 31.2 bits (69), Expect = 0.65
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 4 RGADAGSSGGTGPT-EGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFH 62
R SS G GP+ EG S +S K+R RG R + P S RS
Sbjct: 1635 RSRSGSSSKGRGPSPEGSSSTESSPEHPP--KSRTARRGSRSSPEPKTKSRTPPRRRSSR 1692
Query: 63 PPAAMSERLRPRKRRRNGN---EEDNHLPPQTKRS 94
++ + R +R R+ + E + PP+ +RS
Sbjct: 1693 SSPELTRKARLSRRSRSASSSPETRSRTPPRHRRS 1727
Score = 29.6 bits (65), Expect = 1.9
Identities = 29/118 (24%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 53 LRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVM 112
LR + P RL PR+ R + E P R+ DS P
Sbjct: 1573 LRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSG---SDSSPEPKAPAP 1629
Query: 113 RNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTP 170
R G+ + G GSSS+ SS + P + GS S + TP
Sbjct: 1630 RALPRRSRSGSSS--KGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTP 1685
Score = 28.5 bits (62), Expect = 4.2
Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 21/185 (11%)
Query: 6 ADAGSSGGTGPTEGYSPPAAS--TRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHP 63
AD+ SS T + S A + T A R+ + GR G + S P + R P
Sbjct: 266 ADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTT-STQRPSSP 324
Query: 64 PAAMSERLRPRKRRRNGNEEDNHL--PPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLR 121
A + P + + +E + P +RSS P + T + L
Sbjct: 325 ETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGP--EPPAPTPLLAERHGGSPQPLA 382
Query: 122 GNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTM------------AGSSPNT 169
S S + S SP++ P+ S S++ A SSP +
Sbjct: 383 TTPLSQEPVNPPSEASPTRDRSPPKSPEKL--PQSSSSESSPPSPQPTKVSRHASSSPES 440
Query: 170 PQPVP 174
P+P P
Sbjct: 441 PKPAP 445
Score = 28.1 bits (61), Expect = 5.5
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Query: 6 ADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPA 65
+ + SS + P+ P A + A+ K G R R P + SLR + S+ P
Sbjct: 2639 SSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKP-IDSLRDSRSLSYSPVE 2697
Query: 66 AMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRN 114
+P R + + + + SR+P + +T + MR+
Sbjct: 2698 RRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMRH 2746
Score = 27.7 bits (60), Expect = 7.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 137 SSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSAL 179
SSSSSSSS +S +S S S + + S + PV + AL
Sbjct: 2534 SSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVAL 2576
Score = 27.3 bits (59), Expect = 9.4
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 63 PPAAMSERLRPRKRRRNGNEED----NHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKEN 118
P + R R+R R+G+ + + L P+ RS +P +D P ++ ++
Sbjct: 1563 PDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDK--PRAAPRAQSGSDS 1620
Query: 119 ---------RLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNT 169
R ++ SS G S SSS+ +SP+ S+T S ++
Sbjct: 1621 SPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHP-----PKSRTARRGSRSS 1675
Query: 170 PQP 172
P+P
Sbjct: 1676 PEP 1678
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 40.0 bits (92), Expect = 0.001
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 2 GGRGADAGSSGGTGPTEGYSP-PAASTRAAARAKARGG---GRGGR-RNTTPSVPSLRGA 56
G R +G++ + P +P P AS+ KARGG +GGR R V S + +
Sbjct: 74 GVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRS 133
Query: 57 APRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSK 116
RS R +K R++ + + Q +++S P + S R+ +
Sbjct: 134 RSRS--RSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEAS--PSPCITERSKQ 189
Query: 117 ENRLRGNKAFCASSGSDSGGSSSSSSSSINSPD 149
+ R R + +SS S S SSSSSSSS +S D
Sbjct: 190 KARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 222
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 39.7 bits (91), Expect = 0.002
Identities = 45/147 (30%), Positives = 58/147 (39%), Gaps = 32/147 (21%)
Query: 27 TRAAARAKARGGGRGGRRNTTPSVPSLRGAA-PRSFHPPAAMSERLRPRKRRRNGNEEDN 85
TR +R++++ R R+ + + P R + RS+ P S R RP RRR
Sbjct: 274 TRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMP 333
Query: 86 HLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSSSSSSI 145
PP R SR+PV R R SS S SG SSSSSSS
Sbjct: 334 --PPPRHRRSRSPV-----------------RRRRR-------SSASLSGSSSSSSSSRS 367
Query: 146 NS-----PDRASGPEGSLSQTMAGSSP 167
S P R S P + +SP
Sbjct: 368 RSPPKKPPKRTSSPPRKTRRLSPSASP 394
Score = 35.4 bits (80), Expect = 0.034
Identities = 33/129 (25%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 43 RRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQD 102
RR T P R +PR + PP P +RR + PP +R+S +P +
Sbjct: 578 RRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPP----PPPKRRASPSPPPKR 633
Query: 103 SWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPD----RASGPEGSL 158
P R+S + R SS G S S S+ SP + P
Sbjct: 634 RVSHSPPPKQRSSPVTKRRSPS---LSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRA 690
Query: 159 SQTMAGSSP 167
QT + P
Sbjct: 691 PQTSSSPPP 699
Score = 30.8 bits (68), Expect = 0.85
Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 11 SGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSER 70
+G G +S P+ S + R + + GRR +PS P R S PP
Sbjct: 514 NGEVGRRRRHS-PSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRT 572
Query: 71 LRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNS 115
P RRR + P +R S P Q + P R +
Sbjct: 573 PTPPPRRRTPSPPPRRRSPSPRRYS--PPIQRRYSPSPPPKRRTA 615
Score = 28.1 bits (61), Expect = 5.5
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 19/184 (10%)
Query: 8 AGSSGGTGPTEGYSPPA-----ASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFH 62
+GSS + + SPP S+ + RR PS P+ P++ H
Sbjct: 356 SGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPAT--PPPKTRH 413
Query: 63 PPAAMSERLRPRKRR------RNGNEEDNHLPPQTKRSSRNPVFQ----DSWDTETVPVM 112
P R RK R R + H + KR S +P + + ++E
Sbjct: 414 SPTPQQSN-RTRKSRVSVSPGRTSGKVTKHKGTE-KRESPSPAPKPRKVELSESEEDKGG 471
Query: 113 RNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQP 172
+ + + ++ + + + S S SSSSS P R+ G + + S + P
Sbjct: 472 KMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASP 531
Query: 173 VPEQ 176
P +
Sbjct: 532 SPRK 535
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 39.3 bits (90), Expect = 0.002
Identities = 52/184 (28%), Positives = 75/184 (40%), Gaps = 34/184 (18%)
Query: 2 GGRGADAGSSGGTGPTEGYSP-PAASTRAAARAKARGGGR----GGRRNTT-PSVPSLRG 55
GG G GG GP G P P A +A A GGG+ G R+T P VP G
Sbjct: 9 GGAGDGPLPPGGAGPGPGPGPGPGAGKPPSAPA---GGGQLPAAGAARSTAVPPVPG-PG 64
Query: 56 AAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNS 115
P P + S RL P++ N P K++S T P +
Sbjct: 65 PGPGPGPGPGSTSRRLDPKEPLGN----QRAASPTPKQAS-----------ATTPGHESP 109
Query: 116 KENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPE 175
+E R +G +G ++ G + ++S + SG S+S GS+P +P VP+
Sbjct: 110 RETRAQG------PAGQEADG--PRRTLQVDSRTQRSGRSPSVSPD-RGSTPTSPYSVPQ 160
Query: 176 QSAL 179
+ L
Sbjct: 161 IAPL 164
>gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo
sapiens]
Length = 688
Score = 39.3 bits (90), Expect = 0.002
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 10/158 (6%)
Query: 17 TEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKR 76
++ Y+ A+ R GG RG P + R AP + S+ K
Sbjct: 354 SQKYNEVTATYLLLGRKTEEGGDRGA-----PGLALARVRAPSDTTNGTSSSKGTSHSKG 408
Query: 77 RRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGG 136
+R+ + + + +P + T KE RL G KA C+++GS S G
Sbjct: 409 QRSSSSTYHRQRRHSDFCGPSPAPLHPKRSPTSTGEAELKEERLPGRKASCSTAGSGSRG 468
Query: 137 --SSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQP 172
SS SS ++P++A PE T S+PN P
Sbjct: 469 LPPSSPMVSSAHNPNKAEIPERRKDST---STPNNLPP 503
Score = 31.6 bits (70), Expect = 0.50
Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 26/158 (16%)
Query: 15 GPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAM-SERLRP 73
GP+ P S + A+ + GR+ + S G+ R P + M S P
Sbjct: 427 GPSPAPLHPKRSPTSTGEAELKEERLPGRKASC----STAGSGSRGLPPSSPMVSSAHNP 482
Query: 74 RK-----RRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCA 128
K RR++ N+LPP V + E ++ N KEN
Sbjct: 483 NKAEIPERRKDSTSTPNNLPPSMMTRRNTYVCTERPGAERPSLLPNGKEN---------- 532
Query: 129 SSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSS 166
SSG+ +S SS S+ + P G S+ GS+
Sbjct: 533 SSGTPRVPPASPSSHSL------APPSGERSRLARGST 564
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 39.3 bits (90), Expect = 0.002
Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 28/176 (15%)
Query: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTT----PSVPSLRGA 56
+G AD G G G PA +A +AR G G R + PS P+ R A
Sbjct: 39 VGAASADTGVRGC-----GARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAA 93
Query: 57 A-PRSFHPPAAMSE------------------RLRPRKRRRNGNEEDNHLPPQTKRSSRN 97
P + PP + + + RKR R+ + + K+ SR
Sbjct: 94 PRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRK 153
Query: 98 PVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASG 153
++ + + + R R + + +SS S S SSSSSSSS + + G
Sbjct: 154 DTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG 209
Score = 36.2 bits (82), Expect = 0.020
Identities = 45/157 (28%), Positives = 61/157 (38%), Gaps = 28/157 (17%)
Query: 2 GGRGADAGSSGGTGPTEGYSP-PAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
G R +G++ + P +P P AS+ KARGG G P RGA
Sbjct: 74 GVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSG------PQGGRARGAM--- 124
Query: 61 FHPPAAMSERLRPRKRRRN-GNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENR 119
A + R R R R R+ G + K +SRN S + R ++
Sbjct: 125 ----AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTR--- 177
Query: 120 LRGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEG 156
S S S SSSSSSSS +S +S +G
Sbjct: 178 ----------SSSSSSSSSSSSSSSSSSSSSSSSSDG 204
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 39.3 bits (90), Expect = 0.002
Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 28/176 (15%)
Query: 1 MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTT----PSVPSLRGA 56
+G AD G G G PA +A +AR G G R + PS P+ R A
Sbjct: 39 VGAASADTGVRGC-----GARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAA 93
Query: 57 A-PRSFHPPAAMSE------------------RLRPRKRRRNGNEEDNHLPPQTKRSSRN 97
P + PP + + + RKR R+ + + K+ SR
Sbjct: 94 PRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRK 153
Query: 98 PVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASG 153
++ + + + R R + + +SS S S SSSSSSSS + + G
Sbjct: 154 DTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG 209
Score = 36.2 bits (82), Expect = 0.020
Identities = 45/157 (28%), Positives = 61/157 (38%), Gaps = 28/157 (17%)
Query: 2 GGRGADAGSSGGTGPTEGYSP-PAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRS 60
G R +G++ + P +P P AS+ KARGG G P RGA
Sbjct: 74 GVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSG------PQGGRARGAM--- 124
Query: 61 FHPPAAMSERLRPRKRRRN-GNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENR 119
A + R R R R R+ G + K +SRN S + R ++
Sbjct: 125 ----AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTR--- 177
Query: 120 LRGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEG 156
S S S SSSSSSSS +S +S +G
Sbjct: 178 ----------SSSSSSSSSSSSSSSSSSSSSSSSSDG 204
>gi|150378549 tangerin [Homo sapiens]
Length = 1523
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/189 (23%), Positives = 65/189 (34%), Gaps = 25/189 (13%)
Query: 2 GGRGADAGSSGGTGPTE---------GYSPPAASTRAAARAKARGGGRGGRRNTTPSVPS 52
GG G GP E G +P AS A A ++ GG R + P+
Sbjct: 1176 GGLAQRLRGHGAEGPQEPKEAADRADGAAPGVASRNAVAGRASKDGGAEAPRESRPAEVP 1235
Query: 53 LRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVM 112
G + P R RR + N E +PP S F D + +
Sbjct: 1236 AEGLVNGAGAPGGG-----GVRLRRPSVNGEPGSVPPPRAHGS----FSHVRDAD----L 1282
Query: 113 RNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASGP--EGSLSQTMAGSSPN-T 169
+ +RLR + +F ++++ P A GP Q GSSP+
Sbjct: 1283 LKKRRSRLRNSSSFSMDDPDAGAMGAAAAEGQAPDPSPAPGPPTAADSQQPPGGSSPSEE 1342
Query: 170 PQPVPEQSA 178
P P P + A
Sbjct: 1343 PPPSPGEEA 1351
>gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens]
Length = 210
Score = 38.1 bits (87), Expect = 0.005
Identities = 48/200 (24%), Positives = 71/200 (35%), Gaps = 19/200 (9%)
Query: 2 GGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSF 61
GG DA GG G +G P + A A GGRG R RG APR
Sbjct: 9 GGSTGDADGPGGPGIPDG---PGGNAGGPGEAGAT-GGRGPRGAGAARASGPRGGAPRGP 64
Query: 62 HPPAAMSE--RLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNS---K 116
H AA ++ R RR + H+ + + + P+ R K
Sbjct: 65 HGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLK 124
Query: 117 ENRLRGNKAFCASSGSDSGGSS---------SSSSSSINSPDRASGPEGSLSQTMAGSSP 167
+ + GN F + D G+ S+S P+ +S+ G +P
Sbjct: 125 DFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRPG-TP 183
Query: 168 NTPQPVPEQSALCQGLYFHI 187
P P Q C+G+ F++
Sbjct: 184 GPPPPEGAQGDGCRGVAFNV 203
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 38.1 bits (87), Expect = 0.005
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 19/146 (13%)
Query: 20 YSPPAASTRAAARAKARGGG--RGGRRNTTPSVPSLRGAAPRSFHPPAAMSERL---RPR 74
Y A S+ ++ R K GGG R GR + + S P+ R + P PP+ S R RPR
Sbjct: 2 YRSSARSSVSSHRPKDDGGGGPRSGRSSGSSSGPARRSSPPP---PPSGSSSRTPARRPR 58
Query: 75 KRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDS 134
+ + PP+ +R S +P P R + RG + F
Sbjct: 59 SPSGHRGRRASPSPPRGRRVSPSP-----------PRARRGSPSPPRGRRLFPPGPAGFR 107
Query: 135 GGSSSSSSSSINSPDRASGPEGSLSQ 160
G S S + R P S S+
Sbjct: 108 GSSRGESRADYARDGRGDHPGDSGSR 133
Score = 35.8 bits (81), Expect = 0.026
Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 2 GGRGADAGSSGGT--GPTEGYSPP----AASTRAAARAKARGGGRGGRRNTTPSVPSLRG 55
GG G +G S G+ GP SPP +S+R AR G GRR +PS P R
Sbjct: 19 GGGGPRSGRSSGSSSGPARRSSPPPPPSGSSSRTPARRPRSPSGHRGRR-ASPSPPRGRR 77
Query: 56 AAPRSFHPPAAMSERLRPRKRRR 78
+P PP A P + RR
Sbjct: 78 VSP---SPPRARRGSPSPPRGRR 97
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 37.7 bits (86), Expect = 0.007
Identities = 55/196 (28%), Positives = 73/196 (37%), Gaps = 37/196 (18%)
Query: 5 GADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGR-------GGRRNTTPSVPSLRGAA 57
GA AG GG + PA + ARGGGR G RR T + RG A
Sbjct: 77 GAAAGEEGGARLQATRTWPAGILEGGPQVAARGGGRGWEGGGLGARRAVT---AARRGGA 133
Query: 58 PRSF-HPPAAMSERLRPRKRRRNGN-EEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRN- 114
R P + R RP++ + G E + R S P T P RN
Sbjct: 134 SRPLAGEPWREAARRRPQQCPQWGRARESRSAALASPRVSNAP---------TTPASRNP 184
Query: 115 --SKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASG-PEGSLSQTMAGSSPNT-- 169
+ R G +A +GG + + P R +G G+ S+ AG+ P T
Sbjct: 185 GLRAQERQSGRRA--------AGGGGARAEPPRVPPCRPAGCSGGNRSRRAAGAGPRTTR 236
Query: 170 --PQPVPEQSALCQGL 183
P P P +A GL
Sbjct: 237 RKPPPRPPGTAPAAGL 252
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 37.4 bits (85), Expect = 0.009
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 69 ERLRPRKRRRNGNEEDNHLPP----QTKRSSRNPVFQDSWDTETVP----VMRNSKENRL 120
+R++ K++++G+E++ PP + + R P + +P + R + + +
Sbjct: 195 KRMQDEKKKKSGSEKNTGRPPGEAAEEAKKCRPPNKPQKGPSHDLPRRHSMDRQNSQEKA 254
Query: 121 RGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALC 180
G A+ A S S G S + SI SP SGP S+ + N P + A+
Sbjct: 255 VGAAAYGARSPGGSPGQSPPTGYSILSPAHFSGPRS--SRYLGEFLKNAIHLEPHKKAMA 312
Query: 181 QGLYFHINQTLREAHF 196
G F R AHF
Sbjct: 313 GGHVF------RNAHF 322
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.4 bits (85), Expect = 0.009
Identities = 45/186 (24%), Positives = 61/186 (32%), Gaps = 20/186 (10%)
Query: 2 GGRGADAGSSGGTGPTEGYSPP----AASTRAAARAKARGGGRGGRRNTTPSVPSLRGAA 57
GG G +G+ GG P +SPP + S R +A A R +PS S +
Sbjct: 315 GGSGQRSGAHGGR-PGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQ 373
Query: 58 PRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKE 117
R R R R+RRR + P + R P +S
Sbjct: 374 GRGGRAAGGAGRRRRRRRRRRRSRSSAS-APRRRGRRRPRPAPPRGSSRSLSRARSSSDS 432
Query: 118 NRLRGNKAFCASSGSDSG--------------GSSSSSSSSINSPDRASGPEGSLSQTMA 163
RG GS+ G +S+S S + R GPEG S
Sbjct: 433 GSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSP 492
Query: 164 GSSPNT 169
G P +
Sbjct: 493 GPHPRS 498
Score = 28.5 bits (62), Expect = 4.2
Identities = 34/146 (23%), Positives = 49/146 (33%), Gaps = 25/146 (17%)
Query: 42 GRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQ 101
GRR+ S S + S + + RL P+ R +E Q SR+P
Sbjct: 249 GRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHR-----DEGRKTGSQRSSGSRSP--S 301
Query: 102 DSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQT 161
S + RN SG SG S+ + PD+ S P +
Sbjct: 302 PSGGSGWGSPQRNG-------------GSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDK 348
Query: 162 MAGSSPNTP-----QPVPEQSALCQG 182
A ++P P P P + QG
Sbjct: 349 AAAAAPTPPARGKESPSPRSAPSSQG 374
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 37.0 bits (84), Expect = 0.012
Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 16/164 (9%)
Query: 21 SPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNG 80
+PPAA TRA+ R G P+ P A + P MS L+P+++++
Sbjct: 116 APPAAPTRASPLGARASPPRSGVSLARPA-PGCPRPACEPVYGPLTMS--LKPQQQQQQQ 172
Query: 81 NEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSS 140
++ Q ++ + P P N ++ G+ + + + S SSS
Sbjct: 173 QQQQQQQQQQQQQQQQPP-----------PAAANVRKPG--GSGLLASPAAAPSPSSSSV 219
Query: 141 SSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALCQGLY 184
SSSS +P + G N+ + +P+ + G+Y
Sbjct: 220 SSSSATAPSSVVAATSGGGRPGLGRGRNSNKGLPQSTISFDGIY 263
Score = 27.3 bits (59), Expect = 9.4
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Query: 21 SPPAASTRAAARAKARGGGRGGRRNTTPSV--PSLRGAAPRSFHPPAAMSERLRPRKRRR 78
+P + + + + + + G + N P+ PS A + P +SE + +
Sbjct: 741 TPSSEAKDSRLQDQRQNSPAGNKENIKPNETSPSFSKAENKGISP--VVSEHRKQIDDLK 798
Query: 79 NGNEEDNHLPPQTKRS-----SRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSD 133
+ P T S ++N + S D + ++K++ + + + C +SGS
Sbjct: 799 KFKNDFRLQPSSTSESMDQLLNKNREGEKSRDLIKDKIEPSAKDSFIENSSSNC-TSGSS 857
Query: 134 SGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQ 171
S S S S +++ + GPE + SQ + SSP Q
Sbjct: 858 KPNSPSISPSILSNTEHKRGPEVT-SQGVQTSSPACKQ 894
>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
Length = 1984
Score = 37.0 bits (84), Expect = 0.012
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 10 SSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSE 69
S G +SP S R+ + R RR+ +PS S RG + RS P+
Sbjct: 1637 SHRGPSQRRHHSPSERSHRSPSERSHRSSSE--RRHRSPSQRSHRGPSERSHCSPSERRH 1694
Query: 70 RLRPRKRRRNGNEEDNHLPPQTKRSSRNP 98
R ++ R +E +H P +KRS R+P
Sbjct: 1695 RSPSQRSHRGPSERRHHSP--SKRSHRSP 1721
Score = 37.0 bits (84), Expect = 0.012
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 43 RRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNP 98
RR+ +PS S RG + R H P+ S R R+ R+ +E +H P ++RS +P
Sbjct: 1692 RRHRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSERSHHSP--SERSHHSP 1745
Score = 30.8 bits (68), Expect = 0.85
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 47 TPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNP 98
+PS S RG + R H P+ S R P +R + E H P ++RS R P
Sbjct: 1632 SPSQRSHRGPSQRRHHSPSERSHR-SPSERSHRSSSERRHRSP-SQRSHRGP 1681
Score = 29.6 bits (65), Expect = 1.9
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 15 GPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPR 74
GP+E + R + ++ G RR+ +PS S R A RS P+ S
Sbjct: 1680 GPSERSHCSPSERRHRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSERSHHSPSE 1739
Query: 75 KRRRNGNEEDNHLPPQTKRSS 95
+ + +E +H P + S
Sbjct: 1740 RSHHSPSERRHHSPSERSHCS 1760
Score = 27.7 bits (60), Expect = 7.2
Identities = 52/219 (23%), Positives = 80/219 (36%), Gaps = 30/219 (13%)
Query: 15 GPTEG--YSPPAASTRAAARAKARGGGRGG--------------RRNTTPSVPSLRGAAP 58
GP+E +SP S R+ AR R RR+ +PS S +
Sbjct: 1704 GPSERRHHSPSKRSHRSPARRSHRSPSERSHHSPSERSHHSPSERRHHSPSERSHCSPSE 1763
Query: 59 RSFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSS-----RNPVFQDSWDTETVPVMR 113
RS P+ R +R + +E+ +H P + S R+ + S + R
Sbjct: 1764 RSHCSPSERRHRSPSERRHHSPSEKSHHSPSERSHHSPSERRRHSPLERSRHSLLERSHR 1823
Query: 114 NSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRAS--GPEGSLSQTMAGSSPNTPQ 171
+ E R +++F S S S S S S SP S P + +G + ++P
Sbjct: 1824 SPSER--RSHRSFERSHRRISERSHSPSEKSHLSPLERSRCSPSERRGHSSSGKTCHSPS 1881
Query: 172 PVPEQ--SALCQGL---YFHINQTLREAHFHSLQHRGRP 205
+ S + QG H + R H S GRP
Sbjct: 1882 ERSHRSPSGMRQGRTSERSHRSSCERTRHSPSEMRPGRP 1920
>gi|55749758 DIP2 disco-interacting protein 2 homolog B [Homo
sapiens]
Length = 1576
Score = 37.0 bits (84), Expect = 0.012
Identities = 46/170 (27%), Positives = 66/170 (38%), Gaps = 34/170 (20%)
Query: 20 YSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPP---AAMSERLRP--- 73
YSP T +A + + R N TP+ + + +AP +H A ER R
Sbjct: 52 YSPQTQETDSAVQKELR--------NQTPAPSAAQTSAPSKYHRTRSGGARDERYRSDIH 103
Query: 74 ----RKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENR--LRGNKAFC 127
+ E+ LP TKR R+ Q D T P ++ E+ LR A
Sbjct: 104 TEAVQAALAKHKEQKMALPMPTKR--RSTFVQSPADACTPPDTSSASEDEGSLRRQAALS 161
Query: 128 AS------------SGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGS 165
A+ + S G S+SSS+SS S G GSL+ A +
Sbjct: 162 AALQQSLQNAESWINRSIQGSSTSSSASSTLSHGEVKGTSGSLADVFANT 211
>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
sapiens]
Length = 859
Score = 36.6 bits (83), Expect = 0.015
Identities = 52/211 (24%), Positives = 77/211 (36%), Gaps = 50/211 (23%)
Query: 3 GRGADAGSS---------GGTGPTEGYSPPAASTRAAARAKA------------------ 35
GRGA G+ G T P+EG +P + S + AK
Sbjct: 622 GRGATGGAGDPGSPPPARGDTPPSEGSAPGSTSPDSPGGAKGEPPPPVGPGEGVGLLGTG 681
Query: 36 ------RGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHLPP 89
RGG R G ++ TP+ R A RS +KR + EE+ +
Sbjct: 682 REGTSGRGGSRAGSQHLTPAALLYRAAVTRS-------------QKRGISSEEEEGEVDS 728
Query: 90 QTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPD 149
+ + +S Q +++ S EN G + AS S SG S+++ PD
Sbjct: 729 EVELTSSQRWPQSLNMRQSLSTF--SSENPSDGEEG-TASEPSPSGTPEVGSTNTDERPD 785
Query: 150 RASGPEGSL-SQTMAGSSPNTPQPVPEQSAL 179
S S S+ P+ P PE S+L
Sbjct: 786 ERSDDMCSQGSEIPLDPPPSEVIPGPEPSSL 816
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 36.6 bits (83), Expect = 0.015
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 77 RRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGN--KAFCASSGSD- 133
+ N + P TKR R+ + +S+++R R K ASSGS
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSS 74
Query: 134 --SGGSSSSSSSSINSPDRASGPEGSLSQTMAGSS 166
S SS+SSS S S +SG S + + +GSS
Sbjct: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 36.6 bits (83), Expect = 0.015
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 77 RRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGN--KAFCASSGSD- 133
+ N + P TKR R+ + +S+++R R K ASSGS
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSS 74
Query: 134 --SGGSSSSSSSSINSPDRASGPEGSLSQTMAGSS 166
S SS+SSS S S +SG S + + +GSS
Sbjct: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 36.6 bits (83), Expect = 0.015
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 77 RRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGN--KAFCASSGSD- 133
+ N + P TKR R+ + +S+++R R K ASSGS
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSS 74
Query: 134 --SGGSSSSSSSSINSPDRASGPEGSLSQTMAGSS 166
S SS+SSS S S +SG S + + +GSS
Sbjct: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 36.6 bits (83), Expect = 0.015
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 77 RRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGN--KAFCASSGSD- 133
+ N + P TKR R+ + +S+++R R K ASSGS
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSS 74
Query: 134 --SGGSSSSSSSSINSPDRASGPEGSLSQTMAGSS 166
S SS+SSS S S +SG S + + +GSS
Sbjct: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 36.2 bits (82), Expect = 0.020
Identities = 47/171 (27%), Positives = 67/171 (39%), Gaps = 15/171 (8%)
Query: 6 ADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNT----TPSV-PSLRGAAPRS 60
A +SG G TEG S + A G G G NT TP V P AP S
Sbjct: 1933 AGENTSGALGSTEGSVEATTSAGSGNTAGTSGTGDTGPGNTAVSGTPVVSPGATPGAPGS 1992
Query: 61 FHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKEN-- 118
P A K ++G++ L P R R P + T + PV +++
Sbjct: 1993 STPGEADIGNTSFGKSGKSGHDSLTVLNPAFLR--RTPTVSAA-STTSSPVSKHTDAASA 2049
Query: 119 ---RLRGNKAFCASS--GSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAG 164
+ G+K + G+ SGG +S SS + AS G +S+ + G
Sbjct: 2050 TAVTISGSKPGTPGTPGGATSGGKITSGWSSSGTSTGASNTPGEISKALKG 2100
>gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo
sapiens]
Length = 337
Score = 36.2 bits (82), Expect = 0.020
Identities = 28/86 (32%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 2 GGRGADAG--SSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSV-----PSLR 54
G + A AG S GG G G PAA+ AK+RGGG R P+ P
Sbjct: 165 GQKAATAGAKSPGGGGKKPGQEKPAATGEKTRAAKSRGGGGKKPRREKPAAAGAKNPQKA 224
Query: 55 GAAPRSFHPPAAMSERLRPRKRRRNG 80
AA F R R +K G
Sbjct: 225 AAAGAKFREAGGRKPRWRGQKATEAG 250
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 36.2 bits (82), Expect = 0.020
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 32 RAKARGGGRGGRRNTTPSVPSLR----GAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHL 87
R+++R GR GRR + S R G R R R + RR+ +EE+
Sbjct: 6 RSRSRSAGRRGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRRRRRSRERRSDSEEERW- 64
Query: 88 PPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINS 147
++ SR+P + W + +S E + RG A SSS+SSS+ S
Sbjct: 65 -QRSGMRSRSPP-RPKWHSRDGSSQSDSGEEQSRGQWARRRRRARSWSPSSSASSSA--S 120
Query: 148 PDRASGPEGS 157
P R+ P +
Sbjct: 121 PGRSQSPRAA 130
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 36.2 bits (82), Expect = 0.020
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 32 RAKARGGGRGGRRNTTPSVPSLR----GAAPRSFHPPAAMSERLRPRKRRRNGNEEDNHL 87
R+++R GR GRR + S R G R R R + RR+ +EE+
Sbjct: 6 RSRSRSAGRRGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRRRRRSRERRSDSEEERW- 64
Query: 88 PPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINS 147
++ SR+P + W + +S E + RG A SSS+SSS+ S
Sbjct: 65 -QRSGMRSRSPP-RPKWHSRDGSSQSDSGEEQSRGQWARRRRRARSWSPSSSASSSA--S 120
Query: 148 PDRASGPEGS 157
P R+ P +
Sbjct: 121 PGRSQSPRAA 130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.125 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,266,384
Number of Sequences: 37866
Number of extensions: 565579
Number of successful extensions: 7478
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 485
Number of HSP's that attempted gapping in prelim test: 5089
Number of HSP's gapped (non-prelim): 2006
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.