Guide to the Human Genome
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Name: BNIP1 Sequence: fasta or formatted (228aa) NCBI GI: 153946401
Description:

BCL2/adenovirus E1B 19kD interacting protein 1 isoform BNIP1

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [271aa] BCL2/adenovirus E1B 19kD interacting protein 1 isoform BNIP1-b
alt prot [194aa] BCL2/adenovirus E1B 19kD interacting protein 1 isoform BNIP1-a
alt prot [237aa] BCL2/adenovirus E1B 19kD interacting protein 1 isoform BNIP1-c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         16           2
 C cysteine            1.3          3           1
 D aspartate           4.4         10           1
 E glutamate           8.3         19           2
 F phenylalanine       3.1          7           1
 G glycine             2.6          6           2
 H histidine           1.3          3           1
 I isoleucine          6.1         14           1
 K lysine              9.2         21           2
 L leucine            14.9         34           3
 M methionine          3.1          7           2
 N asparagine          3.5          8           1
 P proline             1.3          3           1
 Q glutamine           9.2         21           2
 R arginine            5.7         13           2
 S serine              7.0         16           2
 T threonine           6.1         14           2
 V valine              4.4         10           1
 W tryptophan          0.4          1           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BCL2/adenovirus E1B 19kD interacting protein 1 isof... 
BNIP1                 0.949   BCL2/adenovirus E1B 19kD interacting protein 1 isof...
BNIP1                 0.795   BCL2/adenovirus E1B 19kD interacting protein 1 isof...
BNIP1                 0.744   BCL2/adenovirus E1B 19kD interacting protein 1 isof...
CEP290                0.046   centrosomal protein 290kDa 
RAB11FIP4             0.046   RAB11 family interacting protein 4 (class II) 
GOLGB1                0.044   golgi autoantigen, golgin subfamily b, macrogolgin ...
UACA                  0.044   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.044   uveal autoantigen with coiled-coil domains and ankyr...
CLIP1                 0.041   restin isoform b 
CLIP1                 0.041   restin isoform a 
CENPE                 0.039   centromere protein E 
FHAD1                 0.037   forkhead-associated (FHA) phosphopeptide binding do...
CCDC63                0.037   coiled-coil domain containing 63 
PLEC1                 0.034   plectin 1 isoform 11 
PLEC1                 0.034   plectin 1 isoform 10 
PLEC1                 0.034   plectin 1 isoform 8 
PLEC1                 0.034   plectin 1 isoform 7 
PLEC1                 0.034   plectin 1 isoform 6 
PLEC1                 0.034   plectin 1 isoform 3 
PLEC1                 0.034   plectin 1 isoform 2 
PLEC1                 0.034   plectin 1 isoform 1 
CCDC30                0.034   coiled-coil domain containing 30 
KIF20B                0.034   M-phase phosphoprotein 1 
HIP1R                 0.034   huntingtin interacting protein-1-related 
LOC100294412          0.034   PREDICTED: similar to KIAA0655 protein 
SMC4                  0.034   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.034   SMC4 structural maintenance of chromosomes 4-like 1 ...
CGNL1                 0.032   cingulin-like 1 
TMF1                  0.032   TATA element modulatory factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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